RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 DPP4P27487 766 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 MSX1P28360 303 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 CEACAM8P31997 349 aaPredicted RBP18.74■□□□□ 0.59
VPS28-206ENST00000526734 ADH7P40394 386 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 GFRA1P56159 465 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 CLDN8P56748 225 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 TFF3Q07654 80 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 MPP2Q14168 576 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 PDCD2Q16342 344 aaPredicted RBP18.74■□□□□ 0.59
VPS28-206ENST00000526734 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.74■□□□□ 0.59
VPS28-206ENST00000526734 MEX3BQ6ZN04 569 aaKnown RBP18.74■□□□□ 0.59
VPS28-206ENST00000526734 RIMKLAQ8IXN7 391 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 FADS6Q8N9I5 356 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 OR56A1Q8NGH5 318 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 SLC9A6Q92581 669 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 GIMAP5Q96F15 307 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 RMND5BQ96G75 393 aaPredicted RBP18.74■□□□□ 0.59
VPS28-206ENST00000526734 TBL1XR1Q9BZK7 514 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 TRIM8Q9BZR9 551 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 CALHM2Q9HA72 323 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 DUSP22Q9NRW4 184 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 FBXL2Q9UKC9 423 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 NCKAP5O14513 1909 aa18.74■□□□□ 0.59
VPS28-206ENST00000526734 NKX2-6A6NCS4 301 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 LINC01387J3KSC0 135 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 DVL2O14641 736 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 UTS2O95399 124 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 LAMP1P11279 417 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 G6PDP11413 515 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 PRF1P14222 555 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 PEX19P40855 299 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 C17orf67Q0P5P2 114 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 BCL2A1Q16548 175 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 BHLHB9Q6PI77 547 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 WDR53Q7Z5U6 358 aaPredicted RBP18.73■□□□□ 0.59
VPS28-206ENST00000526734 RAB3IL1Q8TBN0 382 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 SFXN5Q8TD22 340 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 FAM120BQ96EK7 910 aaKnown RBP18.73■□□□□ 0.59
VPS28-206ENST00000526734 LRRC46Q96FV0 321 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 SFXN2Q96NB2 322 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 STACQ99469 402 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 SORT1Q99523 831 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 G6PC3Q9BUM1 346 aa18.73■□□□□ 0.59
VPS28-206ENST00000526734 SIRT3Q9NTG7 399 aaPredicted RBP18.73■□□□□ 0.59
VPS28-206ENST00000526734 NBPF19A0A087WUL8 3843 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 IGLV3-32A0A0A0MS00 114 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 GXYLT2A0PJZ3 443 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 TMEM120BA0PK00 339 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 MBD3L4A6NDZ8 208 aaPredicted RBP18.72■□□□□ 0.59
VPS28-206ENST00000526734 MBD3L3A6NE82 208 aaPredicted RBP18.72■□□□□ 0.59
VPS28-206ENST00000526734 MBD3L5A6NJ08 208 aaPredicted RBP18.72■□□□□ 0.59
VPS28-206ENST00000526734 SNRPB2P08579 225 aaKnown RBP18.72■□□□□ 0.59
VPS28-206ENST00000526734 ACP2P11117 423 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 RFX3P48380 749 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 DIO3P55073 304 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 EXOSC6Q5RKV6 272 aaKnown RBP18.72■□□□□ 0.59
VPS28-206ENST00000526734 BEND6Q5SZJ8 279 aaPredicted RBP18.72■□□□□ 0.59
VPS28-206ENST00000526734 DCST1Q5T197 706 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 SEM1Q6ZVN7 128 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 TRIM42Q8IWZ5 723 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 COX18Q8N8Q8 333 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 ANKRD42Q8N9B4 389 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 OR2M3Q8NG83 312 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 GOT1L1Q8NHS2 421 aaPredicted RBP18.72■□□□□ 0.59
VPS28-206ENST00000526734 MBD3L2Q8NHZ7 208 aaPredicted RBP18.72■□□□□ 0.59
VPS28-206ENST00000526734 FAM110BQ8TC76 370 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 PIK3R3Q92569 461 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 ZFP3Q96NJ6 502 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 PAIP2Q9BPZ3 127 aaKnown RBP18.72■□□□□ 0.59
VPS28-206ENST00000526734 DUSP26Q9BV47 211 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 UCK2Q9BZX2 261 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 AKTIPQ9H8T0 292 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 NKIRAS1Q9NYS0 192 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 ZNF629Q9UEG4 869 aaPredicted RBP18.72■□□□□ 0.59
VPS28-206ENST00000526734 CELSR2Q9HCU4 2923 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 ITPR2Q14571 2701 aa18.72■□□□□ 0.59
VPS28-206ENST00000526734 ALG1L2C9J202 215 aa18.71■□□□□ 0.59
VPS28-206ENST00000526734 H0Y3Z8 333 aa18.71■□□□□ 0.59
VPS28-206ENST00000526734 CCT3P49368 545 aaKnown RBP18.71■□□□□ 0.59
VPS28-206ENST00000526734 BST1Q10588 318 aa18.71■□□□□ 0.59
VPS28-206ENST00000526734 DUSP5Q16690 384 aa18.71■□□□□ 0.59
VPS28-206ENST00000526734 SPDYE7PQ495Y7 208 aa18.71■□□□□ 0.59
VPS28-206ENST00000526734 GLYR1Q49A26 553 aaPredicted RBP18.71■□□□□ 0.59
VPS28-206ENST00000526734 OR5M10Q6IEU7 315 aa18.71■□□□□ 0.59
VPS28-206ENST00000526734 MISPQ8IVT2 679 aa18.71■□□□□ 0.59
VPS28-206ENST00000526734 KRTCAP2Q8N6L1 136 aa18.71■□□□□ 0.59
VPS28-206ENST00000526734 SLC16A11Q8NCK7 471 aa18.71■□□□□ 0.59
VPS28-206ENST00000526734 UCN2Q96RP3 112 aa18.71■□□□□ 0.59
VPS28-206ENST00000526734 TRIB1Q96RU8 372 aa18.71■□□□□ 0.59
VPS28-206ENST00000526734 BTBD2Q9BX70 525 aa18.71■□□□□ 0.59
VPS28-206ENST00000526734 C20orf27Q9GZN8 174 aa18.71■□□□□ 0.59
VPS28-206ENST00000526734 DSN1Q9H410 356 aa18.71■□□□□ 0.59
VPS28-206ENST00000526734 PIGUQ9H490 435 aa18.71■□□□□ 0.59
VPS28-206ENST00000526734 ZNF395Q9H8N7 513 aaPredicted RBP18.71■□□□□ 0.59
VPS28-206ENST00000526734 NPDC1Q9NQX5 325 aaPredicted RBP18.71■□□□□ 0.59
VPS28-206ENST00000526734 FAF1Q9UNN5 650 aaPredicted RBP18.71■□□□□ 0.59
VPS28-206ENST00000526734 SNX8Q9Y5X2 465 aa18.71■□□□□ 0.59
VPS28-206ENST00000526734 TEX15Q9BXT5 2789 aa18.7■□□□□ 0.58
VPS28-206ENST00000526734 ZIC3O60481 467 aa18.7■□□□□ 0.58
VPS28-206ENST00000526734 KCNK2O95069 426 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms