RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 CENPVL1A0A0U1RR11 272 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 TMEM247A6NEH6 219 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 FAM220BPB1ANY3 271 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 C5orf58C9J3I9 102 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 SCO2O43819 266 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 HS6ST1O60243 411 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 FCMRO60667 390 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 AK1P00568 194 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 TFPTP0C1Z6 253 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 TCN1P20061 433 aaPredicted RBP12.6□□□□□ -0.39
CD44-224ENST00000526669 AQP1P29972 269 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 PNLIPRP2P54317 469 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 PSMD4P55036 377 aaKnown RBP12.6□□□□□ -0.39
CD44-224ENST00000526669 NCALDP61601 193 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 TXNL4AP83876 142 aaKnown RBP12.6□□□□□ -0.39
CD44-224ENST00000526669 CDK6Q00534 326 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 RHDQ02161 417 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 FLYWCH1Q4VC44 716 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 COLEC12Q5KU26 742 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 TYW3Q6IPR3 259 aaKnown RBP12.6□□□□□ -0.39
CD44-224ENST00000526669 IGFL2Q6UWQ7 119 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 BNC2Q6ZN30 1099 aaPredicted RBP12.6□□□□□ -0.39
CD44-224ENST00000526669 RTL4Q6ZR62 310 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 NET1Q7Z628 596 aaPredicted RBP12.6□□□□□ -0.39
CD44-224ENST00000526669 ZADH2Q8N4Q0 377 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 ZNF614Q8N883 585 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 EXD3Q8N9H8 876 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 FAM156AQ8NDB6 213 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 C9orf43Q8TAL5 461 aaPredicted RBP12.6□□□□□ -0.39
CD44-224ENST00000526669 SLC38A5Q8WUX1 472 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 ZNF583Q96ND8 569 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 G6PC3Q9BUM1 346 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 ZNF350Q9GZX5 532 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 QRSL1Q9H0R6 528 aaKnown RBP12.6□□□□□ -0.39
CD44-224ENST00000526669 SLC38A1Q9H2H9 487 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 A4GALTQ9NPC4 353 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 KLHL1Q9NR64 748 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 NDE1Q9NXR1 346 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 TMEM181Q9P2C4 612 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 WDR45Q9Y484 360 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 COL6A6A6NMZ7 2263 aa12.6□□□□□ -0.39
CD44-224ENST00000526669 A0A0G2JMM0 328 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 A0A1W2PPB8 328 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 A0A1W2PRS3 328 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 C2orf72A6NCS6 295 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 OR6C70A6NIJ9 312 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 C17orf51A8MQB3 221 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 KIR3DP1A8MWS1 328 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 TP53I11O14683 189 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 GYG2O15488 501 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 ABCB7O75027 752 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 STX11O75558 287 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 SLC25A12O75746 678 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 NEURL1O76050 574 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 PDE5AO76074 875 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 SORBS2O94875 1100 aaKnown RBP12.59□□□□□ -0.39
CD44-224ENST00000526669 OXSR1O95747 527 aaPredicted RBP12.59□□□□□ -0.39
CD44-224ENST00000526669 MSX2P35548 267 aaPredicted RBP12.59□□□□□ -0.39
CD44-224ENST00000526669 DCTP40126 519 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 MAGEA8P43361 318 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 CRISP3P54108 245 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 EEFSECP57772 596 aaKnown RBP12.59□□□□□ -0.39
CD44-224ENST00000526669 GPR85P60893 370 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 EFR3AQ14156 821 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 LY6DQ14210 128 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.59□□□□□ -0.39
CD44-224ENST00000526669 LACTB2Q53H82 288 aaPredicted RBP12.59□□□□□ -0.39
CD44-224ENST00000526669 LRRC74BQ6ZQY2 392 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 ASB18Q6ZVZ8 466 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 NUP54Q7Z3B4 507 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 SERPINA11Q86U17 422 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 MICU2Q8IYU8 434 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 ZNF619Q8N2I2 560 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 RBMXL3Q8N7X1 1067 aaKnown RBP12.59□□□□□ -0.39
CD44-224ENST00000526669 GATSQ8NAP1 163 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 C11orf65Q8NCR3 313 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 PSD4Q8NDX1 1056 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 MDS2Q8NDY4 140 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 OR2T12Q8NG77 320 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 SPPL2AQ8TCT8 520 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 HAS2Q92819 552 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 CLPTM1LQ96KA5 538 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 TRNT1Q96Q11 434 aaKnown RBP12.59□□□□□ -0.39
CD44-224ENST00000526669 KCTD14Q9BQ13 255 aaPredicted RBP12.59□□□□□ -0.39
CD44-224ENST00000526669 RNF32Q9H0A6 362 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 ALG2Q9H553 416 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 TMEM38AQ9H6F2 299 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 THUMPD1Q9NXG2 353 aaKnown RBP12.59□□□□□ -0.39
CD44-224ENST00000526669 KLRF1Q9NZS2 232 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 LIPT1Q9Y234 373 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 ANGPT4Q9Y264 503 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 CHCHD2Q9Y6H1 151 aaPredicted RBP12.59□□□□□ -0.39
CD44-224ENST00000526669 BOD1L1Q8NFC6 3051 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 SPTA1P02549 2419 aa12.59□□□□□ -0.39
CD44-224ENST00000526669 KIAA1549Q9HCM3 1950 aa12.58□□□□□ -0.4
CD44-224ENST00000526669 PRORSD1PA6NEY8 169 aa12.58□□□□□ -0.4
CD44-224ENST00000526669 PRAMEF25A6NGN4 478 aa12.58□□□□□ -0.4
CD44-224ENST00000526669 KIAA0513O60268 411 aa12.58□□□□□ -0.4
CD44-224ENST00000526669 SOX30O94993 753 aa12.58□□□□□ -0.4
CD44-224ENST00000526669 NAGAP17050 411 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms