RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 FRRS1Q6ZNA5 592 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 Q6ZS92 163 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 MICU2Q8IYU8 434 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 SLC15A4Q8N697 577 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 BCORP1Q8N888 145 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 OR2T12Q8NG77 320 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 NFKBIDQ8NI38 313 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 TMBIM1Q969X1 311 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 OMA1Q96E52 524 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 HSPBAP1Q96EW2 488 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 SPATA9Q9BWV2 254 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 BTBD2Q9BX70 525 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 ZNF350Q9GZX5 532 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 P2RX2Q9UBL9 471 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 CBLCQ9ULV8 474 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 B3GNT3Q9Y2A9 372 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 AP3M1Q9Y2T2 418 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 OR10H1Q9Y4A9 318 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 CNTRLQ7Z7A1 2325 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 DSPPQ9NZW4 1301 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 IGSF10Q6WRI0 2623 aa14.09□□□□□ -0.15
LSM1-203ENST00000520755 PCNX3Q9H6A9 2034 aa14.08□□□□□ -0.15
LSM1-203ENST00000520755 NCKAP5O14513 1909 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 CENPVL1A0A0U1RR11 272 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 DUXAA6NLW8 204 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 ACOX3O15254 700 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 TSPAN2O60636 221 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 GCM2O75603 506 aaPredicted RBP14.08□□□□□ -0.16
LSM1-203ENST00000520755 PRB1P04280 392 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 MSX2P35548 267 aaPredicted RBP14.08□□□□□ -0.16
LSM1-203ENST00000520755 ANXA11P50995 505 aaKnown RBP14.08□□□□□ -0.16
LSM1-203ENST00000520755 CRYBA2P53672 197 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 KCNJ2P63252 427 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 CDK6Q00534 326 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 PLCXD2Q0VAA5 305 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 SCARB2Q14108 478 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 ZNF169Q14929 603 aaPredicted RBP14.08□□□□□ -0.16
LSM1-203ENST00000520755 SOWAHCQ53LP3 525 aaPredicted RBP14.08□□□□□ -0.16
LSM1-203ENST00000520755 C16orf62Q7Z3J2 963 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 ZNF227Q86WZ6 799 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 GPALPP1Q8IXQ4 340 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 ULK2Q8IYT8 1036 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 SLC34A3Q8N130 599 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 ARHGAP24Q8N264 748 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 C11orf65Q8NCR3 313 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 MDS2Q8NDY4 140 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 FAM13CQ8NE31 585 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 OR5M3Q8NGP4 307 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 PNPLA2Q96AD5 504 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 EFHD2Q96C19 240 aaPredicted RBP14.08□□□□□ -0.16
LSM1-203ENST00000520755 SPACA9Q96E40 222 aaPredicted RBP14.08□□□□□ -0.16
LSM1-203ENST00000520755 C5orf34Q96MH7 638 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 SDF2Q99470 211 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 KCTD14Q9BQ13 255 aaPredicted RBP14.08□□□□□ -0.16
LSM1-203ENST00000520755 RSPO3Q9BXY4 272 aaPredicted RBP14.08□□□□□ -0.16
LSM1-203ENST00000520755 HES7Q9BYE0 225 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 SLC38A1Q9H2H9 487 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 KLHL1Q9NR64 748 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 FLRT3Q9NZU0 649 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 NPFFR2Q9Y5X5 522 aa14.08□□□□□ -0.16
LSM1-203ENST00000520755 ATRXP46100 2492 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 NPIPA5A0A0B4J1W7 369 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 TRAV17A0A0B4J275 112 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 ELOVL7A1L3X0 281 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 EIF4E1BA6NMX2 242 aaKnown RBP14.07□□□□□ -0.16
LSM1-203ENST00000520755 NPIPA7E9PJI5 369 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 CDK2AP1O14519 115 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 SLC28A2O43868 658 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 KIAA0513O60268 411 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 FCMRO60667 390 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 DNAJA2O60884 412 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 SLC25A12O75746 678 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 NEURL1O76050 574 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 H6PDO95479 791 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 IL33O95760 270 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 AGR2O95994 175 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 AK1P00568 194 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 FBXO45P0C2W1 286 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 NPIPA8P0DM63 369 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 CD46P15529 392 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 TCN1P20061 433 aaPredicted RBP14.07□□□□□ -0.16
LSM1-203ENST00000520755 HTR1EP28566 365 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 PGM1P36871 562 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 PCBP3P57721 371 aaKnown RBP14.07□□□□□ -0.16
LSM1-203ENST00000520755 FBXW4P57775 412 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 RBBP4Q09028 425 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.07□□□□□ -0.16
LSM1-203ENST00000520755 ZNF630Q2M218 657 aaPredicted RBP14.07□□□□□ -0.16
LSM1-203ENST00000520755 PLEKHN1Q494U1 663 aaPredicted RBP14.07□□□□□ -0.16
LSM1-203ENST00000520755 CYP27C1Q4G0S4 372 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 ZNF766Q5HY98 468 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 ATAD3BQ5T9A4 648 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 TYW3Q6IPR3 259 aaKnown RBP14.07□□□□□ -0.16
LSM1-203ENST00000520755 TRNT1Q96Q11 434 aaKnown RBP14.07□□□□□ -0.16
LSM1-203ENST00000520755 TRIM45Q9H8W5 580 aaPredicted RBP14.07□□□□□ -0.16
LSM1-203ENST00000520755 EXD2Q9NVH0 621 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 THUMPD1Q9NXG2 353 aaKnown RBP14.07□□□□□ -0.16
LSM1-203ENST00000520755 HEATR5AQ86XA9 2040 aa14.07□□□□□ -0.16
LSM1-203ENST00000520755 NPIPB9F8W1W9 429 aa14.06□□□□□ -0.16
LSM1-203ENST00000520755 ADAM10O14672 748 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms