RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 XKR7Q5GH72 579 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLCO4C1Q6ZQN7 724 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLITRK4Q8IW52 837 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FEVQ99581 238 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ACTL8Q9H568 366 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 LMAN1LQ9HAT1 526 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GALNT9Q9HCQ5 603 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ABCD2Q9UBJ2 740 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MGAT4BQ9UQ53 548 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PDCD11Q14690 1871 aaKnown RBP10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CIB4A0PJX0 185 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TRIM3O75382 744 aaPredicted RBP10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ECDO95905 644 aaPredicted RBP10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PAHP00439 452 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ERVK-25P63136 954 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF155Q12901 538 aaPredicted RBP10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PIN1Q13526 163 aaPredicted RBP10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GRHL2Q6ISB3 625 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DLEU7Q6UYE1 221 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF730Q6ZMV8 503 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLC46A3Q7Z3Q1 461 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 AQP11Q8NBQ7 271 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TNFAIP8L1Q8WVP5 186 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF607Q96SK3 696 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FAM83CQ9BQN1 747 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FAM120CQ9NX05 1096 aaKnown RBP10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TBC1D29Q9UFV1 150 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 VWA8A3KMH1 1905 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OR14I1A6ND48 311 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 POM121CA8CG34 1229 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TEX46H3BTG2 121 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SOX30O94993 753 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SAGP10523 405 aaPredicted RBP10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ITPKBP27987 946 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 VLDLRP98155 873 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 C19orf57Q0VDD7 668 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GAB1Q13480 694 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 LEXMQ3ZCV2 418 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLC35F1Q5T1Q4 408 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 C18orf63Q68DL7 685 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 USP51Q70EK9 711 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CXXC5Q7LFL8 322 aaKnown RBP10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TECPR1Q7Z6L1 1165 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 C10orf111Q8N326 155 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 UCN3Q969E3 161 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 KLHDC7BQ96G42 594 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ST6GAL2Q96JF0 529 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FUZQ9BT04 418 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CFHR5Q9BXR6 569 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FOXQ1Q9C009 403 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PIGUQ9H490 435 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CLMPQ9H6B4 373 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ACTR10Q9NZ32 417 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 THAP10Q9P2Z0 257 aaPredicted RBP10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 APOBEC3BQ9UH17 382 aaKnown RBP10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RHPN2P1A8MT19 583 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 LCMT2O60294 686 aaKnown RBP10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 HCN1O60741 890 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLCO2B1O94956 709 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF33BQ06732 778 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 NTRK2Q16620 822 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DPY19L1Q2PZI1 675 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PYCR3Q53H96 274 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 C6orf132Q5T0Z8 1188 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 LRRN1Q6UXK5 716 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PDZD3Q86UT5 571 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF547Q8IVP9 402 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DPP10Q8N608 796 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OR1E3Q8WZA6 343 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MRPL38Q96DV4 380 aaKnown RBP10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZDHHC5Q9C0B5 715 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 NANSQ9NR45 359 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 NUDT15Q9NV35 164 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OSGIN1Q9UJX0 560 aa10.12□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 APC2O95996 2303 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MED12Q93074 2177 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OR2A25A4D2G3 310 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ANHXE9PGG2 379 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 XKP51811 444 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DCST1Q5T197 706 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PDZD9Q8IXQ8 264 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DNAJC5GQ8N7S2 189 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TMIEQ8NEW7 156 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TCEAL3Q969E4 200 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RFT1Q96AA3 541 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RAB7BQ96AH8 199 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MNTQ99583 582 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 C12orf57Q99622 126 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ARL6Q9H0F7 186 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 C6orf106Q9H6K1 298 aaPredicted RBP10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 C3orf14Q9HBI5 128 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MAFFQ9ULX9 164 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TLR4O00206 839 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ANKRD28O15084 1053 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RP2O75695 350 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CDK1P06493 297 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CISD3P0C7P0 127 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ITGAMP11215 1152 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ARSBP15848 533 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms