RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 RBM14Q96PK6 669 aaKnown RBP3.7□□□□□ -1.82
HMGB1P38-201ENST00000490557 CCT7Q99832 543 aa3.7□□□□□ -1.82
HMGB1P38-201ENST00000490557 NFKBIZQ9BYH8 718 aa3.7□□□□□ -1.82
HMGB1P38-201ENST00000490557 TRIM9Q9C026 710 aa3.7□□□□□ -1.82
HMGB1P38-201ENST00000490557 POLR1EQ9GZS1 481 aaKnown RBP3.7□□□□□ -1.82
HMGB1P38-201ENST00000490557 RAB33BQ9H082 229 aa3.7□□□□□ -1.82
HMGB1P38-201ENST00000490557 RMND5AQ9H871 391 aa3.7□□□□□ -1.82
HMGB1P38-201ENST00000490557 ESM1Q9NQ30 184 aa3.7□□□□□ -1.82
HMGB1P38-201ENST00000490557 FARSBQ9NSD9 589 aaKnown RBP3.7□□□□□ -1.82
HMGB1P38-201ENST00000490557 IMPAD1Q9NX62 359 aa3.7□□□□□ -1.82
HMGB1P38-201ENST00000490557 SMPD3Q9NY59 655 aaPredicted RBP3.7□□□□□ -1.82
HMGB1P38-201ENST00000490557 UTP6Q9NYH9 597 aaKnown RBP3.7□□□□□ -1.82
HMGB1P38-201ENST00000490557 ZNF175Q9Y473 711 aa3.7□□□□□ -1.82
HMGB1P38-201ENST00000490557 SPACA6W5XKT8 324 aa3.7□□□□□ -1.82
HMGB1P38-201ENST00000490557 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.7□□□□□ -1.82
HMGB1P38-201ENST00000490557 C15orf38-AP3S2A0A0A6YYH1 394 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 RHOBTB1O94844 696 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 EPB41P11171 864 aaKnown RBP3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 GNSP15586 552 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 GALP22466 123 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 RFC4P35249 363 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 NPY2RP49146 381 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 ETV1P50549 477 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 METAP1P53582 386 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 SPIBQ01892 262 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 SPP2Q13103 211 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 PLD1Q13393 1074 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 LTB4RQ15722 352 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 NADK2Q4G0N4 442 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 SPATA46Q5T0L3 261 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 TSEN54Q7Z6J9 526 aaKnown RBP3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 ADAMTSL2Q86TH1 951 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 RANBP3LQ86VV4 465 aaPredicted RBP3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 ZNF679Q8IYX0 411 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 FAM133AQ8N9E0 248 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 EIF1ADQ8N9N8 165 aaKnown RBP3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 FAM184AQ8NB25 1140 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 BBOF1Q8ND07 529 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 LHX4Q969G2 390 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 DEFB118Q96PH6 123 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 ACCSQ96QU6 501 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 ZBTB18Q99592 522 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 ZSCAN5AQ9BUG6 496 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 ZNF416Q9BWM5 594 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 TMEM117Q9H0C3 514 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 STMN4Q9H169 189 aaPredicted RBP3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 CARD9Q9H257 536 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 SUDS3Q9H7L9 328 aaPredicted RBP3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 ECT2Q9H8V3 914 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 FANCEQ9HB96 536 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 TNFRSF19Q9NS68 423 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 PRODH2Q9UF12 536 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 PSME2Q9UL46 239 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 DNPEPQ9ULA0 475 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 MRPS7Q9Y2R9 242 aaKnown RBP3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 UBE4BO95155 1302 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 TTC41PQ6P2S7 1318 aa3.69□□□□□ -1.82
HMGB1P38-201ENST00000490557 SYNJ2O15056 1496 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 CCT8L1PA6NM43 557 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 C11orf98E9PRG8 122 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 H0Y8G0 127 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 SAP18O00422 153 aaKnown RBP3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 POLR3GO15318 223 aaPredicted RBP3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 RANBP6O60518 1105 aaKnown RBP3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 CIB2O75838 187 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 CXCL14O95715 111 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 OAS1P00973 400 aaKnown RBP3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 IGHG3P01860 377 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 PROS1P07225 676 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 CALCBP10092 127 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 PVRP15151 417 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 PGAM2P15259 253 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 SAA4P35542 130 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 TAGLN2P37802 199 aaKnown RBP3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 NUMBP49757 651 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 CCL11P51671 97 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 RAG2P55895 527 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 HAND2P61296 217 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 MAP2K1Q02750 393 aaPredicted RBP3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 PDZK1IP1Q13113 114 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 GSG1Q2KHT4 349 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 MS4A13Q5J8X5 152 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 SEL1L2Q5TEA6 688 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 RSBN1Q5VWQ0 802 aaPredicted RBP3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 CES3Q6UWW8 571 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 LRRC70Q7Z2Q7 622 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 TMEM185AQ8NFB2 350 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 PHYHIPQ92561 330 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 RAPGEF5Q92565 580 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 TMEM45BQ96B21 275 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 TPD52L3Q96J77 140 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 APOOQ9BUR5 198 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 EDEM2Q9BV94 578 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 NLNQ9BYT8 704 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 RPRD1BQ9NQG5 326 aaKnown RBP3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 FAM114A2Q9NRY5 505 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 SUN2Q9UH99 717 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 PLA2G4CQ9UP65 541 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 CHTOPQ9Y3Y2 248 aaKnown RBP3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 FKBP7Q9Y680 259 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms