RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 C3orf14Q9HBI5 128 aa16.48■□□□□ 0.23
COL9A3-214ENST00000490398 NOP53Q9NZM5 478 aaKnown RBP16.48■□□□□ 0.23
COL9A3-214ENST00000490398 SNX8Q9Y5X2 465 aa16.48■□□□□ 0.23
COL9A3-214ENST00000490398 KCNE3Q9Y6H6 103 aa16.48■□□□□ 0.23
COL9A3-214ENST00000490398 CSMD2Q7Z408 3487 aa16.48■□□□□ 0.23
COL9A3-214ENST00000490398 FREM3P0C091 2139 aa16.48■□□□□ 0.23
COL9A3-214ENST00000490398 FAM90A27PA6NNH2 459 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 C9JVG2 144 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 ZIC3O60481 467 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 WDR1O75083 606 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 KCNK2O95069 426 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 C1QCP02747 245 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 RPL3P39023 403 aaKnown RBP16.47■□□□□ 0.23
COL9A3-214ENST00000490398 STARP49675 285 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 NME5P56597 212 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 HBA1P69905 142 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 PSPHP78330 225 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 OCRLQ01968 901 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 LASP1Q14847 261 aaKnown RBP16.47■□□□□ 0.23
COL9A3-214ENST00000490398 SMU1Q2TAY7 513 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 NHSL2Q5HYW2 709 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 CCNJQ5T5M9 372 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 AGBL2Q5U5Z8 902 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 PLXDC2Q6UX71 529 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 MAVSQ7Z434 540 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 WDR75Q8IWA0 830 aaKnown RBP16.47■□□□□ 0.23
COL9A3-214ENST00000490398 EID3Q8N140 333 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 FADS6Q8N9I5 356 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 OR2M3Q8NG83 312 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 FAM110BQ8TC76 370 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 ABTB1Q969K4 478 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-214ENST00000490398 MARVELD3Q96A59 401 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 TEX37Q96LM6 180 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 KLHDC3Q9BQ90 382 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 THAP1Q9NVV9 213 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 GPATCH2Q9NW75 528 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 NKIRAS1Q9NYS0 192 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 COQ3Q9NZJ6 369 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 MED11Q9P086 117 aa16.47■□□□□ 0.23
COL9A3-214ENST00000490398 RPH3AQ9Y2J0 694 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-214ENST00000490398 GOLGA8QA0A0J9YX86 632 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 GOLGA8OA6NCC3 632 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 GOLGA8NF8WBI6 632 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 SCN2BO60939 215 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 SNUPNO95149 360 aaKnown RBP16.46■□□□□ 0.23
COL9A3-214ENST00000490398 LBPP18428 481 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 EPHA3P29320 983 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 CCT3P49368 545 aaKnown RBP16.46■□□□□ 0.23
COL9A3-214ENST00000490398 GFRA1P56159 465 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 B3GALT5-AS1P59052 145 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 MAD2L1Q13257 205 aaPredicted RBP16.46■□□□□ 0.23
COL9A3-214ENST00000490398 ACSF3Q4G176 576 aaPredicted RBP16.46■□□□□ 0.23
COL9A3-214ENST00000490398 ACAD11Q709F0 780 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 CAMKMTQ7Z624 323 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 NAXEQ8NCW5 288 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 OR5M1Q8NGP8 315 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 OR10Q1Q8NGQ4 319 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 OR4C3Q8NH37 302 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 OR14L1PQ8NHC6 308 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 LILRB4Q8NHJ6 448 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 DUSP19Q8WTR2 217 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 CA5BP1Q8WTZ4 195 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 JADE3Q92613 823 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 CDS1Q92903 461 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 SERHL2Q9H4I8 314 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 MANSC1Q9H8J5 431 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 NPDC1Q9NQX5 325 aaPredicted RBP16.46■□□□□ 0.23
COL9A3-214ENST00000490398 FAM120CQ9NX05 1096 aaKnown RBP16.46■□□□□ 0.23
COL9A3-214ENST00000490398 TAS2R10Q9NYW0 307 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 CAMK2AQ9UQM7 478 aa16.46■□□□□ 0.23
COL9A3-214ENST00000490398 APCP25054 2843 aa16.46■□□□□ 0.22
COL9A3-214ENST00000490398 GMFGO60234 142 aa16.45■□□□□ 0.22
COL9A3-214ENST00000490398 KCNH1O95259 989 aa16.45■□□□□ 0.22
COL9A3-214ENST00000490398 ALOX5P09917 674 aa16.45■□□□□ 0.22
COL9A3-214ENST00000490398 CHRNB4P30926 498 aa16.45■□□□□ 0.22
COL9A3-214ENST00000490398 SRD5A2P31213 254 aa16.45■□□□□ 0.22
COL9A3-214ENST00000490398 RNF144AP50876 292 aaPredicted RBP16.45■□□□□ 0.22
COL9A3-214ENST00000490398 PRR5P85299 388 aa16.45■□□□□ 0.22
COL9A3-214ENST00000490398 TFF3Q07654 80 aa16.45■□□□□ 0.22
COL9A3-214ENST00000490398 TP53BP2Q13625 1128 aa16.45■□□□□ 0.22
COL9A3-214ENST00000490398 ANKRD46Q86W74 232 aa16.45■□□□□ 0.22
COL9A3-214ENST00000490398 TRIM42Q8IWZ5 723 aa16.45■□□□□ 0.22
COL9A3-214ENST00000490398 TNIP2Q8NFZ5 429 aa16.45■□□□□ 0.22
COL9A3-214ENST00000490398 ATAD3AQ9NVI7 634 aa16.45■□□□□ 0.22
COL9A3-214ENST00000490398 PPP4R1LQ9P1A2 415 aa16.45■□□□□ 0.22
COL9A3-214ENST00000490398 KIAA1549Q9HCM3 1950 aa16.45■□□□□ 0.22
COL9A3-214ENST00000490398 TACC2O95359 2948 aa16.45■□□□□ 0.22
COL9A3-214ENST00000490398 TTC36A6NLP5 189 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 ZNF195O14628 629 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 CFLARO15519 480 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 HNRNPRO43390 633 aaKnown RBP16.44■□□□□ 0.22
COL9A3-214ENST00000490398 ANGPTL1O95841 491 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 GABRA1P14867 456 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 H2AFXP16104 143 aaPredicted RBP16.44■□□□□ 0.22
COL9A3-214ENST00000490398 DPP4P27487 766 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 IL12AP29459 219 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 PRIM2P49643 509 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 UFM1P61960 85 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 RPS26P62854 115 aaKnown RBP16.44■□□□□ 0.22
COL9A3-214ENST00000490398 SPDYE7PQ495Y7 208 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms