RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 PRKAA2P54646 552 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 FOXA1P55317 472 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 PKNOX1P55347 436 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 CLDN20P56880 219 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 EEFSECP57772 596 aaKnown RBP11.16□□□□□ -0.62
CPSF3-204ENST00000489403 C2orf80Q0P641 193 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 LCP2Q13094 533 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 PON3Q15166 354 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 GUSBP1Q15486 140 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 CYP27C1Q4G0S4 372 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 SLC22A9Q8IVM8 553 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 ZNF610Q8N9Z0 462 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 NOA1Q8NC60 698 aaKnown RBP11.16□□□□□ -0.62
CPSF3-204ENST00000489403 CDC26Q8NHZ8 85 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 FNDC9Q8TBE3 224 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 L3HYPDHQ96EM0 354 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 C1GALT1C1Q96EU7 318 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 Q96MF0 132 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 CCL19Q99731 98 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 PIGQQ9BRB3 760 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 GLIPR2Q9H4G4 154 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 GSTO2Q9H4Y5 243 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 SDHAF3Q9NRP4 125 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 ELOVL5Q9NYP7 299 aa11.16□□□□□ -0.62
CPSF3-204ENST00000489403 C19orf53Q9UNZ5 99 aaPredicted RBP11.16□□□□□ -0.62
CPSF3-204ENST00000489403 HEATR5AQ86XA9 2040 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 FAM171A2A8MVW0 826 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 C16orf97H3BN30 126 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 H7C1Q1 480 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 LINC01387J3KSC0 135 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 UBFD1O14562 309 aaKnown RBP11.15□□□□□ -0.62
CPSF3-204ENST00000489403 SLITRK5O94991 958 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 IL33O95760 270 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 FPR1P21462 350 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 KCNJ5P48544 419 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 DECR1Q16698 335 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 WHAMMP3Q1A5X7 153 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 SPDYAQ5MJ70 313 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 LGSNQ5TDP6 509 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 FAM71E1Q6IPT2 247 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 PRSS57Q6UWY2 283 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 C22orf34Q6ZV56 151 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 YTHDF3Q7Z739 585 aaKnown RBP11.15□□□□□ -0.62
CPSF3-204ENST00000489403 MARCH3Q86UD3 253 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 LCA5Q86VQ0 697 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 OR2L13Q8N349 312 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 METTL25Q8N6Q8 603 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 PPP1R14CQ8TAE6 165 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.15□□□□□ -0.626e-6■■■□□ 15.1
CPSF3-204ENST00000489403 PERPQ96FX8 193 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 ZC3HAV1LQ96H79 300 aaKnown RBP11.15□□□□□ -0.62
CPSF3-204ENST00000489403 SLC39A3Q9BRY0 314 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 PTGES2Q9H7Z7 377 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 Q9N2J8 555 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 MIEF1Q9NQG6 463 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 DDX18Q9NVP1 670 aaKnown RBP11.15□□□□□ -0.62
CPSF3-204ENST00000489403 FAM120CQ9NX05 1096 aaKnown RBP11.15□□□□□ -0.62
CPSF3-204ENST00000489403 ZNF175Q9Y473 711 aa11.15□□□□□ -0.62
CPSF3-204ENST00000489403 POLR3HQ9Y535 204 aaPredicted RBP11.15□□□□□ -0.62
CPSF3-204ENST00000489403 DSCAMO60469 2012 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 ABCA2Q9BZC7 2435 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 CCDC151A5D8V7 595 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 SHISA8B8ZZ34 492 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 GOLGA8RI6L899 631 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 AQP8O94778 261 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 ABHD2P08910 425 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 NTSP30990 170 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 RFX3P48380 749 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 FGFBP1Q14512 234 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 GLYR1Q49A26 553 aaPredicted RBP11.14□□□□□ -0.63
CPSF3-204ENST00000489403 APOOLQ6UXV4 268 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 C20orf204Q6ZNR8 217 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 FAM214BQ7L5A3 538 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 GGNQ86UU5 652 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 DUSP19Q8WTR2 217 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 GFM2Q969S9 779 aaKnown RBP11.14□□□□□ -0.63
CPSF3-204ENST00000489403 ELP4Q96EB1 424 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 C16orf45Q96MC5 204 aaPredicted RBP11.14□□□□□ -0.63
CPSF3-204ENST00000489403 AMDHD1Q96NU7 426 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 LMF2Q9BU23 707 aaKnown RBP11.14□□□□□ -0.63
CPSF3-204ENST00000489403 MID1IP1Q9NPA3 183 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 MYNNQ9NPC7 610 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 TAS2R7Q9NYW3 318 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 GRID1Q9ULK0 1009 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 PROCRQ9UNN8 238 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 AP4B1Q9Y6B7 739 aa11.14□□□□□ -0.63
CPSF3-204ENST00000489403 IGLV3-32A0A0A0MS00 114 aa11.13□□□□□ -0.63
CPSF3-204ENST00000489403 GXYLT2A0PJZ3 443 aa11.13□□□□□ -0.63
CPSF3-204ENST00000489403 TRIM64A6NGJ6 449 aa11.13□□□□□ -0.63
CPSF3-204ENST00000489403 TRIM64BA6NI03 449 aa11.13□□□□□ -0.63
CPSF3-204ENST00000489403 SMAD7O15105 426 aaKnown RBP11.13□□□□□ -0.63
CPSF3-204ENST00000489403 GMFGO60234 142 aa11.13□□□□□ -0.63
CPSF3-204ENST00000489403 UTS2O95399 124 aa11.13□□□□□ -0.63
CPSF3-204ENST00000489403 ANGPTL1O95841 491 aa11.13□□□□□ -0.63
CPSF3-204ENST00000489403 IGKV1D-16P01601 117 aa11.13□□□□□ -0.63
CPSF3-204ENST00000489403 SLC6A8P48029 635 aa11.13□□□□□ -0.63
CPSF3-204ENST00000489403 CLK3P49761 638 aaKnown RBP11.13□□□□□ -0.63
CPSF3-204ENST00000489403 PSMD4P55036 377 aaKnown RBP11.13□□□□□ -0.63
CPSF3-204ENST00000489403 RPS3AP61247 264 aaKnown RBP11.13□□□□□ -0.63
CPSF3-204ENST00000489403 PRR5P85299 388 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms