RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 TNFSF10P50591 281 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 FBXW4P57775 412 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 NTRK2Q16620 822 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 ARHGAP11BQ3KRB8 267 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 GPAT3Q53EU6 434 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 ARSJQ5FYB0 599 aaPredicted RBP9.47□□□□□ -0.89
SKA1-204ENST00000488454 DCST2Q5T1A1 773 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 SLC22A10Q63ZE4 541 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 SLC25A25Q6KCM7 469 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 NANOGP8Q6NSW7 305 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 HACD2Q6Y1H2 254 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 ARPINQ7Z6K5 226 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 MSRB3Q8IXL7 192 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 EXD3Q8N9H8 876 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 GOLM1Q8NBJ4 401 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 TMEM178AQ8NBL3 297 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 CATSPER1Q8NEC5 780 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 OR8J3Q8NGG0 315 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 FAM110BQ8TC76 370 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 EFHD2Q96C19 240 aaPredicted RBP9.47□□□□□ -0.89
SKA1-204ENST00000488454 UBL7Q96S82 380 aaPredicted RBP9.47□□□□□ -0.89
SKA1-204ENST00000488454 SECISBP2Q96T21 854 aaKnown RBP9.47□□□□□ -0.89
SKA1-204ENST00000488454 CPPED1Q9BRF8 314 aaPredicted RBP9.47□□□□□ -0.89
SKA1-204ENST00000488454 HOXD1Q9GZZ0 328 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 TRIM45Q9H8W5 580 aaPredicted RBP9.47□□□□□ -0.89
SKA1-204ENST00000488454 NANOGQ9H9S0 305 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 CACYBPQ9HB71 228 aaKnown RBP9.47□□□□□ -0.89
SKA1-204ENST00000488454 NDE1Q9NXR1 346 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 CNIH4Q9P003 139 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 P2RX2Q9UBL9 471 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 ZNF232Q9UNY5 417 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 GMEB1Q9Y692 573 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 KCNE3Q9Y6H6 103 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 CFAP47Q6ZTR5 3102 aa9.47□□□□□ -0.89
SKA1-204ENST00000488454 LAMA5O15230 3695 aa9.46□□□□□ -0.89
SKA1-204ENST00000488454 A0A1W2PNR3 127 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 B2RBV5 119 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 C5orf58C9J3I9 102 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 KLRC4-KLRK1H3BQV0 150 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 K7EM74 188 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 SLC28A2O43868 658 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 TSPAN2O60636 221 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 UGT2B11O75310 529 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 STX11O75558 287 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 SLC25A12O75746 678 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 NEURL1O76050 574 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 CBX6O95503 412 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 C1QCP02747 245 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 PDGFAP04085 211 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 SP1P08047 785 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 HOXB9P17482 250 aaPredicted RBP9.46□□□□□ -0.9
SKA1-204ENST00000488454 MTPNP58546 118 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 PSMA6P60900 246 aaKnown RBP9.46□□□□□ -0.9
SKA1-204ENST00000488454 ZNF169Q14929 603 aaPredicted RBP9.46□□□□□ -0.9
SKA1-204ENST00000488454 CYP51A1Q16850 503 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.46□□□□□ -0.9
SKA1-204ENST00000488454 FLYWCH1Q4VC44 716 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 ZNF766Q5HY98 468 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 EXOSC6Q5RKV6 272 aaKnown RBP9.46□□□□□ -0.9
SKA1-204ENST00000488454 GCNT6Q5T4J0 391 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 CCNJQ5T5M9 372 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 C16orf89Q6UX73 402 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 METTL25Q8N6Q8 603 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 ZNF527Q8NB42 609 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 FAM98AQ8NCA5 519 aaKnown RBP9.46□□□□□ -0.9
SKA1-204ENST00000488454 CHDHQ8NE62 594 aaPredicted RBP9.46□□□□□ -0.9
SKA1-204ENST00000488454 OR10G3Q8NGC4 313 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 SPPL2AQ8TCT8 520 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 SIGLEC12Q96PQ1 595 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 TRNT1Q96Q11 434 aaKnown RBP9.46□□□□□ -0.9
SKA1-204ENST00000488454 SDF2Q99470 211 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 SLC39A3Q9BRY0 314 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 SERHL2Q9H4I8 314 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 METTL7AQ9H8H3 244 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 KLHL1Q9NR64 748 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 SACM1LQ9NTJ5 587 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 CALML5Q9NZT1 146 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 B3GNT3Q9Y2A9 372 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 KLF13Q9Y2Y9 288 aaPredicted RBP9.46□□□□□ -0.9
SKA1-204ENST00000488454 WDR45Q9Y484 360 aa9.46□□□□□ -0.9
SKA1-204ENST00000488454 SCDO00767 359 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 SNX4O95219 450 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 UTS2O95399 124 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 TFPTP0C1Z6 253 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 CYP4B1P13584 511 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 CNR1P21554 472 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 SLC6A2P23975 617 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 MVDP53602 400 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 CRISP3P54108 245 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 PSME3P61289 254 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 RBBP4Q09028 425 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 KLRB1Q12918 225 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 LY6DQ14210 128 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 GPR68Q15743 365 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 SYPL1Q16563 259 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 RABL3Q5HYI8 236 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 HEPHL1Q6MZM0 1159 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 LRRC74BQ6ZQY2 392 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 Q6ZS92 163 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 MDGA2Q7Z553 956 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms