RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 RPS26P11Q5JNZ5 115 aaPredicted RBP11.26□□□□□ -0.61
SDC1-206ENST00000482879 DESI1Q6ICB0 168 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 C19orf48Q6RUI8 117 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 NUP54Q7Z3B4 507 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 SLC30A8Q8IWU4 369 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 GPALPP1Q8IXQ4 340 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 DND1Q8IYX4 353 aaKnown RBP11.26□□□□□ -0.61
SDC1-206ENST00000482879 FAM156AQ8NDB6 213 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 FAM13CQ8NE31 585 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 HIPK4Q8NE63 616 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 TNIP2Q8NFZ5 429 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 MCUR1Q96AQ8 359 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 CLPTM1LQ96KA5 538 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 SMAD5Q99717 465 aaKnown RBP11.26□□□□□ -0.61
SDC1-206ENST00000482879 CADM1Q9BY67 442 aaKnown RBP11.26□□□□□ -0.61
SDC1-206ENST00000482879 ZNF350Q9GZX5 532 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 SLC38A1Q9H2H9 487 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 PRORYQ9H606 182 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 POLE3Q9NRF9 147 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 MKLN1Q9UL63 735 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 ANGPT4Q9Y264 503 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 PCDHGA9Q9Y5G4 932 aaKnown RBP11.26□□□□□ -0.61
SDC1-206ENST00000482879 PCNX3Q9H6A9 2034 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 NPIPA5A0A0B4J1W7 369 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 A0A0G2JPF8 293 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 HNRNPCL2B2RXH8 293 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 HNRNPCL3B7ZW38 293 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 NPIPA7E9PJI5 369 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 CDK2AP1O14519 115 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 TP53I11O14683 189 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 PDE5AO76074 875 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 PGM3O95394 542 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 ZIC2O95409 532 aaPredicted RBP11.25□□□□□ -0.61
SDC1-206ENST00000482879 GUSBP08236 651 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 NPIPA8P0DM63 369 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 HNRNPCL4P0DMR1 293 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 ME2P23368 584 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 HTR1EP28566 365 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 LCN1P31025 176 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 MSX2P35548 267 aaPredicted RBP11.25□□□□□ -0.61
SDC1-206ENST00000482879 POLE2P56282 527 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 ARG2P78540 354 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 TUBA3CQ13748 450 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 INTS11Q5TA45 600 aaKnown RBP11.25□□□□□ -0.61
SDC1-206ENST00000482879 PRAMEF8Q5VWM4 474 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 PRAMEF7Q5VXH5 474 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 TYW3Q6IPR3 259 aaKnown RBP11.25□□□□□ -0.61
SDC1-206ENST00000482879 TUBA3EQ6PEY2 450 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 FRRS1Q6ZNA5 592 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 ASRGL1Q7L266 308 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 CYP4Z2PQ8N1L4 340 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 ZNF619Q8N2I2 560 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 OR10G3Q8NGC4 313 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 BBS10Q8TAM1 723 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 TTC9Q92623 222 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 HAS2Q92819 552 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 HGDQ93099 445 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 TMCO6Q96DC7 493 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 SGCZQ96LD1 299 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 TREX2Q9BQ50 279 aaPredicted RBP11.25□□□□□ -0.61
SDC1-206ENST00000482879 ARHGAP9Q9BRR9 750 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 HOXD1Q9GZZ0 328 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 RNF32Q9H0A6 362 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 SAP130Q9H0E3 1048 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 RUBCNLQ9H714 662 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 TRIM45Q9H8W5 580 aaPredicted RBP11.25□□□□□ -0.61
SDC1-206ENST00000482879 MTHFD2LQ9H903 347 aaPredicted RBP11.25□□□□□ -0.61
SDC1-206ENST00000482879 BCL2L10Q9HD36 194 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 FLRT3Q9NZU0 649 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 LRFN1Q9P244 771 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 EGFL7Q9UHF1 273 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 ZNF451Q9Y4E5 1061 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 MGAQ8IWI9 3026 aa11.25□□□□□ -0.61
SDC1-206ENST00000482879 PKD1L2Q7Z442 2459 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 OR5H15A6NDH6 313 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 ERICH4A6NGS2 130 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 CXCR6O00574 342 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 RRP9O43818 475 aaKnown RBP11.24□□□□□ -0.61
SDC1-206ENST00000482879 KIAA0513O60268 411 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 ICOSLGO75144 302 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 SORBS2O94875 1100 aaKnown RBP11.24□□□□□ -0.61
SDC1-206ENST00000482879 AQP1P29972 269 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 DCTP40126 519 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 ATP12AP54707 1039 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 RPP38P78345 283 aaKnown RBP11.24□□□□□ -0.61
SDC1-206ENST00000482879 VEZF1Q14119 521 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 OR1C1Q15619 314 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 COL28A1Q2UY09 1125 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 GRAMD1BQ3KR37 738 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 LINC00303Q3SY05 128 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 AP1ARQ63HQ0 302 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 SLC22A10Q63ZE4 541 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 SPINK14Q6IE38 97 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 IGFL2Q6UWQ7 119 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 RTL4Q6ZR62 310 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 HMGN2P46Q86SG4 172 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 KRT73Q86Y46 540 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 HPS6Q86YV9 775 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 FBXW8Q8N3Y1 598 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 OR4C3Q8NH37 302 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms