RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 IL12BP29460 328 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 OTX2P32243 289 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 MAGEA2P43356 314 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 SOX8P57073 446 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 CHRNEQ04844 493 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 FOXC1Q12948 553 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 FLYWCH1Q4VC44 716 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 IFI44LQ53G44 452 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 H3F3CQ6NXT2 135 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 NPSR1Q6W5P4 371 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 GRAMD2AQ8IUY3 354 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 MISPQ8IVT2 679 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 ZNF440Q8IYI8 595 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 ZNF321PQ8N8H1 164 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 ZSCAN1Q8NBB4 408 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 ZNF248Q8NDW4 579 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 SNIP1Q8TAD8 396 aaKnown RBP9.39□□□□□ -0.91
USP39-215ENST00000481409 CANT1Q8WVQ1 401 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 TTC9Q92623 222 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 TAMM41Q96BW9 452 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 C8orf44Q96CB5 159 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 SLC47A1Q96FL8 570 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 GAL3ST4Q96RP7 486 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 ZNF347Q96SE7 839 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 SECISBP2Q96T21 854 aaKnown RBP9.39□□□□□ -0.91
USP39-215ENST00000481409 NXF5Q9H1B4 397 aaKnown RBP9.39□□□□□ -0.91
USP39-215ENST00000481409 RUBCNLQ9H714 662 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 UBQLN4Q9NRR5 601 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.39□□□□□ -0.91
USP39-215ENST00000481409 GMPR2Q9P2T1 348 aaKnown RBP9.39□□□□□ -0.91
USP39-215ENST00000481409 TEKT2Q9UIF3 430 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 ZNF223Q9UK11 482 aaPredicted RBP9.39□□□□□ -0.91
USP39-215ENST00000481409 FBXL4Q9UKA2 621 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 SLC13A4Q9UKG4 626 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 SLC35A3Q9Y2D2 325 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 DTX4Q9Y2E6 619 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 YARS2Q9Y2Z4 477 aaKnown RBP9.39□□□□□ -0.91
USP39-215ENST00000481409 NPFFR2Q9Y5X5 522 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 KCNE3Q9Y6H6 103 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 IGHV3-20A0A0C4DH32 117 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 A8MUI8 341 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 NPIPB9F8W1W9 429 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 H3BNH8 94 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 TSPAN2O60636 221 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 DEAF1O75398 565 aaPredicted RBP9.38□□□□□ -0.91
USP39-215ENST00000481409 PPM1BO75688 479 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 ATP6V1G2O95670 118 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 ZNF682O95780 498 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 LGI1O95970 557 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 SEMG1P04279 462 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 FABP3P05413 133 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 FESP07332 822 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 HPGDP15428 266 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 TBXA2RP21731 343 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 F8A1P23610 371 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 FASP25445 335 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 ABCD3P28288 659 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 IFNA8P32881 189 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 CLK3P49761 638 aaKnown RBP9.38□□□□□ -0.91
USP39-215ENST00000481409 NR0B1P51843 470 aaKnown RBP9.38□□□□□ -0.91
USP39-215ENST00000481409 CRYBA2P53672 197 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 PLCXD2Q0VAA5 305 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 ZNF311Q5JNZ3 666 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 TBCELQ5QJ74 424 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 TMEM81Q6P7N7 255 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 OPN5Q6U736 354 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 NUP54Q7Z3B4 507 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 CLEC1AQ8NC01 280 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 OR52P1PQ8NH57 321 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 FBXO30Q8TB52 745 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 PIK3R3Q92569 461 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 TMCO6Q96DC7 493 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 OMA1Q96E52 524 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 HSH2DQ96JZ2 352 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 BDH2Q9BUT1 245 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 SCNM1Q9BWG6 230 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 OSBPL10Q9BXB5 764 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 ATP13A2Q9NQ11 1180 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 C8orf4Q9NR00 106 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 STOML1Q9UBI4 398 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 MKLN1Q9UL63 735 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 ABCG2Q9UNQ0 655 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 AURKCQ9UQB9 309 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 DTNAQ9Y4J8 743 aa9.38□□□□□ -0.91
USP39-215ENST00000481409 CNOT1A5YKK6 2376 aaKnown RBP9.37□□□□□ -0.91
USP39-215ENST00000481409 GXYLT2A0PJZ3 443 aa9.37□□□□□ -0.91
USP39-215ENST00000481409 SCDO00767 359 aa9.37□□□□□ -0.91
USP39-215ENST00000481409 TP53I11O14683 189 aa9.37□□□□□ -0.91
USP39-215ENST00000481409 FCMRO60667 390 aa9.37□□□□□ -0.91
USP39-215ENST00000481409 FMO6PO60774 539 aa9.37□□□□□ -0.91
USP39-215ENST00000481409 REM1O75628 298 aa9.37□□□□□ -0.91
USP39-215ENST00000481409 IFNW1P05000 195 aa9.37□□□□□ -0.91
USP39-215ENST00000481409 FBXO45P0C2W1 286 aa9.37□□□□□ -0.91
USP39-215ENST00000481409 LIFP15018 202 aa9.37□□□□□ -0.91
USP39-215ENST00000481409 CD247P20963 164 aa9.37□□□□□ -0.91
USP39-215ENST00000481409 AQP1P29972 269 aa9.37□□□□□ -0.91
USP39-215ENST00000481409 SOX11P35716 441 aa9.37□□□□□ -0.91
USP39-215ENST00000481409 DCTP40126 519 aa9.37□□□□□ -0.91
USP39-215ENST00000481409 ID4P47928 161 aa9.37□□□□□ -0.91
USP39-215ENST00000481409 SMIM11AP58511 58 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms