RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 G6PC2Q9NQR9 355 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 BFARQ9NZS9 450 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 PRODH2Q9UF12 536 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 MID2Q9UJV3 735 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 ADAMTS6Q9UKP5 1117 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 CTAGE9A4FU28 777 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 SMTNL1A8MU46 457 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 VSTM5A8MXK1 200 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 G3V4G9 280 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 TO15178 435 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 ULK1O75385 1050 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 SLITRK5O94991 958 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 CRYBA1P05813 215 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 NR2F6P10588 404 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 PAX7P23759 505 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 SERPINF1P36955 418 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 SLC1A3P43003 542 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 GPR6P46095 362 aaPredicted RBP7.02□□□□□ -1.29
USP54-211ENST00000474929 RFX3P48380 749 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 HNMTP50135 292 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 ARFIP1P53367 373 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 MYBPC1Q00872 1141 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 TRIP10Q15642 601 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 PAGE2BQ5JRK9 111 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 DCAF12L2Q5VW00 463 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 ASPHD2Q6ICH7 369 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 OR52E8Q6IFG1 317 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 OR7E24Q6IFN5 339 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 ACSM5Q6NUN0 579 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 MFSD12Q6NUT3 480 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 C1orf229Q6ZS94 237 aaPredicted RBP7.02□□□□□ -1.29
USP54-211ENST00000474929 SPATC1Q76KD6 591 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 APTXQ7Z2E3 356 aaKnown RBP7.02□□□□□ -1.29
USP54-211ENST00000474929 GPR180Q86V85 440 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 SLC43A2Q8N370 569 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 OR2M3Q8NG83 312 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 OR2V1Q8NHB1 315 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 CLDND2Q8NHS1 167 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 UBASH3BQ8TF42 649 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 RNF138Q8WVD3 245 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 RAB39BQ96DA2 213 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 C1GALT1C1Q96EU7 318 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 KCNS3Q9BQ31 491 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 SLC30A2Q9BRI3 323 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 PLK3Q9H4B4 646 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 PRM3Q9NNZ6 103 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 LYARQ9NX58 379 aaKnown RBP7.02□□□□□ -1.29
USP54-211ENST00000474929 TAS2R13Q9NYV9 303 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 KLHL9Q9P2J3 617 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 NKX1-2Q9UD57 310 aaPredicted RBP7.02□□□□□ -1.29
USP54-211ENST00000474929 ABCG2Q9UNQ0 655 aa7.02□□□□□ -1.29
USP54-211ENST00000474929 CIB4A0PJX0 185 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 ADAMDEC1O15204 470 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 CXCL13O43927 109 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 ERLIN1O75477 346 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 IL33O95760 270 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 GUCA1CO95843 209 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 TSPAN15O95858 294 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 NGFP01138 241 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 FSHBP01225 129 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 PTMAP06454 111 aaKnown RBP7.01□□□□□ -1.29
USP54-211ENST00000474929 YES1P07947 543 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 F7P08709 466 aaPredicted RBP7.01□□□□□ -1.29
USP54-211ENST00000474929 ALOX5P09917 674 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 DRD5P21918 477 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 ARNTP27540 789 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 PPICP45877 212 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 OR3A2P47893 321 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 CLK3P49761 638 aaKnown RBP7.01□□□□□ -1.29
USP54-211ENST00000474929 RAG2P55895 527 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 RPL15P61313 204 aaKnown RBP7.01□□□□□ -1.29
USP54-211ENST00000474929 ZBED6P86452 979 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 LAPTM5Q13571 262 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 NNATQ16517 81 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 ZNF239Q16600 458 aaKnown RBP7.01□□□□□ -1.29
USP54-211ENST00000474929 HIST2H2ACQ16777 129 aaPredicted RBP7.01□□□□□ -1.29
USP54-211ENST00000474929 TUSC1Q2TAM9 212 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 MST1LQ2TV78 715 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 HBMQ6B0K9 141 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 HIST2H2AA3Q6FI13 130 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 OR5M10Q6IEU7 315 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 C11orf87Q6NUJ2 197 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 CENPUQ71F23 418 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 TRABD2AQ86V40 505 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 ADGRG3Q86Y34 549 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 ZCCHC7Q8N3Z6 543 aaKnown RBP7.01□□□□□ -1.29
USP54-211ENST00000474929 C17orf78Q8N4C9 275 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 CALML6Q8TD86 181 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 POP5Q969H6 163 aaKnown RBP7.01□□□□□ -1.29
USP54-211ENST00000474929 UBE2E3Q969T4 207 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 ADGRG7Q96K78 797 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 EFCAB11Q9BUY7 163 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 PACSIN1Q9BY11 444 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 ITPAQ9BY32 194 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 TMPRSS13Q9BYE2 586 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 OSBPL8Q9BZF1 889 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 HSD3B7Q9H2F3 369 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 KCNF1Q9H3M0 494 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 DSN1Q9H410 356 aa7.01□□□□□ -1.29
USP54-211ENST00000474929 NTMQ9P121 344 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms