RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SMURF1Q9HCE7 757 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 LIPT1Q9Y234 373 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 RBMX2Q9Y388 322 aaKnown RBP17.82■□□□□ 0.44
VIM-203ENST00000469543 A3GALT2U3KPV4 340 aa17.82■□□□□ 0.44
VIM-203ENST00000469543 UBXN7O94888 489 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 LIMS3P0CW19 117 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 LIMS4P0CW20 117 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 NDUFV2P19404 249 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 ST3GAL3Q11203 375 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 C1DQ13901 141 aaKnown RBP17.81■□□□□ 0.44
VIM-203ENST00000469543 GNA13Q14344 377 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 TRAM2Q15035 370 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 SLC35F1Q5T1Q4 408 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 WDR88Q6ZMY6 472 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 ZNF836Q6ZNA1 936 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 UBE2J2Q8N2K1 259 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 NEDD4LQ96PU5 975 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 MED20Q9H944 212 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 ATP13A2Q9NQ11 1180 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 C20orf141Q9NUB4 165 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 DZANK1Q9NVP4 752 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 HYKKA2RU49 373 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 AP3D1O14617 1153 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 ACP2P11117 423 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 RPS15AP62244 130 aaKnown RBP17.81■□□□□ 0.44
VIM-203ENST00000469543 TNFRSF17Q02223 184 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 CSTF1Q05048 431 aaKnown RBP17.81■□□□□ 0.44
VIM-203ENST00000469543 RGS1Q08116 209 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 TSPAN31Q12999 210 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 MLLT11Q13015 90 aaPredicted RBP17.81■□□□□ 0.44
VIM-203ENST00000469543 NFATC4Q14934 902 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 ALG11Q2TAA5 492 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 SMAP2Q8WU79 429 aaPredicted RBP17.81■□□□□ 0.44
VIM-203ENST00000469543 FAM131CQ96AQ9 280 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 SLC41A3Q96GZ6 507 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 SLCO1B1Q9Y6L6 691 aa17.81■□□□□ 0.44
VIM-203ENST00000469543 ZNF670-ZNF695F2Z2N8 137 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 FGF17O60258 216 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 ACADMP11310 421 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 ANXA11P50995 505 aaKnown RBP17.8■□□□□ 0.44
VIM-203ENST00000469543 TPMTP51580 245 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 HNRNPA0Q13151 305 aaKnown RBP17.8■□□□□ 0.44
VIM-203ENST00000469543 ZNF79Q15937 498 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 TUBA3EQ6PEY2 450 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 FIGLAQ6QHK4 219 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 CAMKK1Q8N5S9 505 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 ART5Q96L15 291 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 WDR92Q96MX6 357 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 SDF2Q99470 211 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 RBCK1Q9BYM8 510 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 SLC28A3Q9HAS3 691 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 SSR3Q9UNL2 185 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 SAGE2PA6NJ88 616 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 PRODHO43272 600 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 TSPAN19P0C672 248 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 MYL12AP19105 171 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 RORCP51449 518 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 TAB1Q15750 504 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 DEFB110Q30KQ9 67 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 ZNF791Q3KP31 576 aaPredicted RBP17.8■□□□□ 0.44
VIM-203ENST00000469543 FCRLBQ6BAA4 426 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 RPLP0P6Q8NHW5 317 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 SAMD8Q96LT4 415 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 HDHD5Q9BXW7 423 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 ABCB9Q9NP78 766 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 SEC14L4Q9UDX3 406 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 POU2F3Q9UKI9 436 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 ZNF443Q9Y2A4 671 aaPredicted RBP17.8■□□□□ 0.44
VIM-203ENST00000469543 V9GYH0 126 aa17.8■□□□□ 0.44
VIM-203ENST00000469543 A6NCN8 305 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 H0YGG7 62 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 H3BQ06 376 aaPredicted RBP17.79■□□□□ 0.44
VIM-203ENST00000469543 SOCS6O14544 535 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 SNPHO15079 494 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 CT62P0C5K7 136 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 WNT4P56705 351 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 ARF3P61204 181 aaPredicted RBP17.79■□□□□ 0.44
VIM-203ENST00000469543 FABP5Q01469 135 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 CRTC2Q53ET0 693 aaPredicted RBP17.79■□□□□ 0.44
VIM-203ENST00000469543 HEPHL1Q6MZM0 1159 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 DGAT2L6Q6ZPD8 337 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 NRARPQ7Z6K4 114 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 ZAR1Q86SH2 424 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 MINDY2Q8NBR6 621 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 PFN4Q8NHR9 129 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 GNPDA2Q8TDQ7 276 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 TM4SF19Q96DZ7 209 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 DPH1Q9BZG8 443 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 ACTR10Q9NZ32 417 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 KLHL3Q9UH77 587 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 TBC1D24Q9ULP9 559 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 UGT2A1Q9Y4X1 527 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 HEBP2Q9Y5Z4 205 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 MUC3AQ02505 3323 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 ISPDA4D126 451 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 SRP54P61011 504 aaKnown RBP17.79■□□□□ 0.44
VIM-203ENST00000469543 C1orf61Q13536 156 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 Q6ZSR6 202 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 MOAP1Q96BY2 351 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 S1PR5Q9H228 398 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms