RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 C3orf14Q9HBI5 128 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 LRTM1Q9HBL6 345 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 MED11Q9P086 117 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 PACSIN3Q9UKS6 424 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 PRRC2AP48634 2157 aaKnown RBP14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 A0A1W2PNV4 684 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 A8MXE2 369 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 LINC01387J3KSC0 135 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 AZIN1O14977 448 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 PDPK1O15530 556 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 TNFSF13O75888 250 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 CD99P14209 185 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 KRT4P19013 534 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 HSPB3Q12988 150 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 STX5Q13190 355 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 RAET1LQ5VY80 246 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 OR2A2Q6IF42 318 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 ZNF551Q7Z340 670 aaPredicted RBP14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 C10orf107Q8IVU9 208 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 C4orf33Q8N1A6 199 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 MEIOBQ8N635 442 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 DUSP19Q8WTR2 217 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 GFM2Q969S9 779 aaKnown RBP14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 ALPK1Q96QP1 1244 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 CCT7Q99832 543 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 TRMOQ9BU70 441 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 RTN4RQ9BZR6 473 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 PTGDR2Q9Y5Y4 395 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 ACANP16112 2415 aa14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 HRNRQ86YZ3 2850 aaPredicted RBP14.97□□□□□ -0.01
CCDC28B-204ENST00000469003 FBN3Q75N90 2809 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 SH3D21A4FU49 640 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 SLC22A20A6NK97 555 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 MSTNO14793 375 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 TBX19O60806 448 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 TRIM13O60858 407 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 KCNH1O95259 989 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 RAF1P04049 648 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 PRPS2P11908 318 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 NEFHP12036 1026 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 HOXB4P17483 251 aaPredicted RBP14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 GABRA3P34903 492 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 GPC1P35052 558 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 RFX3P48380 749 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 EEFSECP57772 596 aaKnown RBP14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 PCLAFQ15004 111 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 GLYR1Q49A26 553 aaPredicted RBP14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 Q6ZSR9 355 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 MARCH3Q86UD3 253 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 HOMEZQ8IX15 550 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 UBQLNLQ8IYU4 475 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 ZFP28Q8NHY6 868 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 HOXB13Q92826 284 aaPredicted RBP14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 C1GALT1C1Q96EU7 318 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 GATA5Q9BWX5 397 aaPredicted RBP14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 PCNX3Q9H6A9 2034 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 REEP4Q9H6H4 257 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 PLEKHF2Q9H8W4 249 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 ZNF337Q9Y3M9 751 aa14.96□□□□□ -0.01
CCDC28B-204ENST00000469003 IGLV3-32A0A0A0MS00 114 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 GXYLT2A0PJZ3 443 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 OR2M5A3KFT3 312 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 TNFRSF21O75509 655 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 UTS2O95399 124 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 CHEK2O96017 543 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 HRGP04196 525 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 SDC1P18827 310 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 MAP3K8P41279 467 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 FRKP42685 505 aaPredicted RBP14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 PCYT1AP49585 367 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 SUCLG1P53597 346 aaKnown RBP14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 CLDN15P56746 228 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 PRR5P85299 388 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 C17orf67Q0P5P2 114 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 VPS26BQ4G0F5 336 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 ZNF385BQ569K4 471 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 KANK2Q63ZY3 851 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 ANKRD26P1Q6NSI1 321 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 OR2T11Q8NH01 316 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 CEP70Q8NHQ1 597 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 CIDECQ96AQ7 238 aaPredicted RBP14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 PPCDCQ96CD2 204 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 STARD4Q96DR4 205 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 ZBED6CLQ96FA7 236 aaPredicted RBP14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 PIGQQ9BRB3 760 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 TBL1XR1Q9BZK7 514 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 IQCGQ9H095 443 aaKnown RBP14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 TUBB1Q9H4B7 451 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 EQTNQ9NQ60 294 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 MKS1Q9NXB0 559 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 NTMQ9P121 344 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 NDRG3Q9UGV2 375 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 FIS1Q9Y3D6 152 aa14.95□□□□□ -0.02
CCDC28B-204ENST00000469003 H3BML4 177 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 SEC14L5O43304 696 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 AKAP10O43572 662 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 NKX2-2O95096 273 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 ATE1O95260 518 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms