RNA–Protein interactions for RNA: ENST00000464362.5

HPS4-208, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 4,277 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-208ENST00000464362 PTCHD1Q96NR3 888 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 SYNPO2LQ9H987 977 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 LAMP5Q9UJQ1 280 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 POLR2AP24928 1970 aaKnown RBP8.55□□□□□ -1.04
HPS4-208ENST00000464362 TEX13CA0A0J9YWL9 993 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 MEIS3P1A6NDR6 274 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 H0YIV9 168 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 RNGTTO60942 597 aaKnown RBP8.55□□□□□ -1.04
HPS4-208ENST00000464362 DRD2P14416 443 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 NDUFS1P28331 727 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 UQCRC1P31930 480 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 RPS19P39019 145 aaKnown RBP8.55□□□□□ -1.04
HPS4-208ENST00000464362 FXYD6P3P58550 94 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 HNRNPA1L2Q32P51 320 aaKnown RBP8.55□□□□□ -1.04
HPS4-208ENST00000464362 PRAMEF17Q5VTA0 474 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 PPP2R2DQ66LE6 453 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 C18orf63Q68DL7 685 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 LSM14AQ8ND56 463 aaKnown RBP8.55□□□□□ -1.04
HPS4-208ENST00000464362 TRMT10AQ8TBZ6 339 aaKnown RBP8.55□□□□□ -1.04
HPS4-208ENST00000464362 BADQ92934 168 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 MYNNQ9NPC7 610 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 MGAT4AQ9UM21 535 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 RASD1Q9Y272 281 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 B3GNT3Q9Y2A9 372 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 PLEKHA6Q9Y2H5 1048 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 NOP16Q9Y3C1 178 aaKnown RBP8.55□□□□□ -1.04
HPS4-208ENST00000464362 LAMB2P55268 1798 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 SCDO00767 359 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 KLF8O95600 359 aaPredicted RBP8.55□□□□□ -1.04
HPS4-208ENST00000464362 ECDO95905 644 aaPredicted RBP8.55□□□□□ -1.04
HPS4-208ENST00000464362 SPARCP09486 303 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 TACSTD2P09758 323 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 PGAM2P15259 253 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 ERVFC1P60507 584 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 CHAF1BQ13112 559 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 SMAD2Q15796 467 aaKnown RBP8.55□□□□□ -1.04
HPS4-208ENST00000464362 TMEM69Q5SWH9 247 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 GID4Q8IVV7 300 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 RIMKLAQ8IXN7 391 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 SLC7A13Q8TCU3 470 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 CREB3L4Q8TEY5 395 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 SLC17A9Q9BYT1 436 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 MRTO4Q9UKD2 239 aaKnown RBP8.55□□□□□ -1.04
HPS4-208ENST00000464362 HS3ST2Q9Y278 367 aa8.55□□□□□ -1.04
HPS4-208ENST00000464362 OR2A25A4D2G3 310 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 PDCD5O14737 125 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 PPM1DO15297 605 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 SCO2O43819 266 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 ZNF432O94892 652 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 ZNF888P0CJ79 500 aaPredicted RBP8.54□□□□□ -1.04
HPS4-208ENST00000464362 PEPDP12955 493 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 RAB3BP20337 219 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 MPP7Q5T2T1 576 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 KCTD9Q7L273 389 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 NOXA1Q86UR1 476 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 POGLUT1Q8NBL1 392 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 NLGN4YQ8NFZ3 816 aaPredicted RBP8.54□□□□□ -1.04
HPS4-208ENST00000464362 NEDD4LQ96PU5 975 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 FYTTD1Q96QD9 318 aaKnown RBP8.54□□□□□ -1.04
HPS4-208ENST00000464362 CPEB1Q9BZB8 566 aaKnown RBP8.54□□□□□ -1.04
HPS4-208ENST00000464362 MGAT4CQ9UBM8 478 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 METTL15A6NJ78 407 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 TEX46H3BTG2 121 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 KRT33AO76009 404 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 ARHGEF15O94989 841 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 JUNBP17275 347 aaPredicted RBP8.54□□□□□ -1.04
HPS4-208ENST00000464362 UBXN2BQ14CS0 331 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 LRFN4Q6PJG9 635 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 CYHR1Q6ZMK1 362 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 USP53Q70EK8 1073 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 CCDC28AQ8IWP9 274 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 FTMTQ8N4E7 242 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 OR52E1Q8NGJ3 308 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 SMARCD2Q92925 531 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 EID2BQ96D98 161 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 BCL7BQ9BQE9 202 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 TAPBPLQ9BX59 468 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 DUSP21Q9H596 190 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 CWH43Q9H720 699 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 IFT46Q9NQC8 304 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 POT1Q9NUX5 634 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 MED11Q9P086 117 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 PCDHGB1Q9Y5G3 927 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 DLEC1Q9Y238 1755 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 UBR3Q6ZT12 1888 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 ZFC3H1O60293 1989 aaKnown RBP8.54□□□□□ -1.04
HPS4-208ENST00000464362 SLC22A31A6NKX4 558 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 CPNE6O95741 557 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 H2AFB2P0C5Z0 115 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 ERP29P30040 261 aaKnown RBP8.54□□□□□ -1.04
HPS4-208ENST00000464362 CTBP2P56545 445 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 CLDN12P56749 244 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 RPS21P63220 83 aaKnown RBP8.54□□□□□ -1.04
HPS4-208ENST00000464362 CDK3Q00526 305 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 PUDPQ08623 228 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 ALG11Q2TAA5 492 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 LIMS2Q7Z4I7 341 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 REM2Q8IYK8 340 aaPredicted RBP8.54□□□□□ -1.04
HPS4-208ENST00000464362 CSNK1A1LQ8N752 337 aa8.54□□□□□ -1.04
HPS4-208ENST00000464362 GDPD1Q8N9F7 314 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms