RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	ADGRG7	Q96K78	797 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	TMEM237	Q96Q45	408 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	ZNF382	Q96SR6	550 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	PAFAH2	Q99487	392 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	NPAS1	Q99742	590 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	PINK1	Q9BXM7	581 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	CDC42EP4	Q9H3Q1	356 aa	Known RBP	10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	SLC35C2	Q9NQQ7	365 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	MED11	Q9P086	117 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	PPP4R1L	Q9P1A2	415 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	ABCG2	Q9UNQ0	655 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	SVEP1	Q4LDE5	3571 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815		A0A087WV62	115 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	SERTM1	A2A2V5	107 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	UPK1A	O00322	258 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	SEC14L5	O43304	696 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	PLAU	P00749	431 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	IGKV1D-16	P01601	117 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	TIA1	P31483	386 aa	Known RBP eCLIP	10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	MAP3K8	P41279	467 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	ERCC6L	Q2NKX8	1250 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	CTU2	Q2VPK5	515 aa	Known RBP	10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	GLYR1	Q49A26	553 aa	Predicted RBP	10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	CYP27C1	Q4G0S4	372 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	GLE1	Q53GS7	698 aa	Known RBP	10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	RAET1L	Q5VY80	246 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	ANKRD34A	Q69YU3	496 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	STAC2	Q6ZMT1	411 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	SH2D5	Q6ZV89	423 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	FAM214B	Q7L5A3	538 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	FAM9C	Q8IZT9	166 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	OR2L13	Q8N349	312 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	MEIOB	Q8N635	442 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	SPATA3	Q8NHX4	192 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	UHMK1	Q8TAS1	419 aa	Known RBP	10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	DTNBP1	Q96EV8	351 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	KLHDC3	Q9BQ90	382 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	SLC39A3	Q9BRY0	314 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	STMN4	Q9H169	189 aa	Predicted RBP	10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	PLSCR4	Q9NRQ2	329 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	FAM120C	Q9NX05	1096 aa	Known RBP	10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	TAS2R9	Q9NYW1	312 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	DMGDH	Q9UI17	866 aa	Known RBP	10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	ZNF180	Q9UJW8	692 aa		10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	C19orf53	Q9UNZ5	99 aa	Predicted RBP	10.01	□□□□□ -0.81
PTPN7-204	ENST00000462815	SHISA8	B8ZZ34	492 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815		H3BML4	177 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	LINC01387	J3KSC0	135 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	DLX3	O60479	287 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	SS18L1	O75177	396 aa	Predicted RBP	10	□□□□□ -0.81
PTPN7-204	ENST00000462815	IL33	O95760	270 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	THBS1	P07996	1170 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	IL11	P20809	199 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	TBXA2R	P21731	343 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	PSMA4	P25789	261 aa	Known RBP	10	□□□□□ -0.81
PTPN7-204	ENST00000462815	GCA	P28676	217 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	PHB	P35232	272 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	EEFSEC	P57772	596 aa	Known RBP	10	□□□□□ -0.81
PTPN7-204	ENST00000462815	PPP2R2B	Q00005	443 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	ZNF844	Q08AG5	666 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	ZNF155	Q12901	538 aa	Predicted RBP	10	□□□□□ -0.81
PTPN7-204	ENST00000462815	FGFBP1	Q14512	234 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	HEPACAM	Q14CZ8	416 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	RASA2	Q15283	850 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	SPIN4	Q56A73	249 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	FAM71E1	Q6IPT2	247 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	TMEM107	Q6UX40	140 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	ZNF704	Q6ZNC4	412 aa	Predicted RBP	10	□□□□□ -0.81
PTPN7-204	ENST00000462815	MARCH3	Q86UD3	253 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	SAMD14	Q8IZD0	417 aa	Predicted RBP	10	□□□□□ -0.81
PTPN7-204	ENST00000462815	OR6K3	Q8NGY3	331 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	LILRB1	Q8NHL6	650 aa	Predicted RBP	10	□□□□□ -0.81
PTPN7-204	ENST00000462815	ZC3HAV1L	Q96H79	300 aa	Known RBP	10	□□□□□ -0.81
PTPN7-204	ENST00000462815	KCNA7	Q96RP8	456 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	LMF2	Q9BU23	707 aa	Known RBP	10	□□□□□ -0.81
PTPN7-204	ENST00000462815	EBPL	Q9BY08	206 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	SHCBP1L	Q9BZQ2	653 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	NMRK1	Q9NWW6	199 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	TAS2R7	Q9NYW3	318 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	TMEM216	Q9P0N5	145 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	PROCR	Q9UNN8	238 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	AP4B1	Q9Y6B7	739 aa		10	□□□□□ -0.81
PTPN7-204	ENST00000462815	ROS1	P08922	2347 aa		9.99	□□□□□ -0.81
PTPN7-204	ENST00000462815	TRIM49D1	C9J1S8	452 aa		9.99	□□□□□ -0.81
PTPN7-204	ENST00000462815	OVOL3	O00110	214 aa		9.99	□□□□□ -0.81
PTPN7-204	ENST00000462815	UBFD1	O14562	309 aa	Known RBP	9.99	□□□□□ -0.81
PTPN7-204	ENST00000462815	TMCC2	O75069	709 aa		9.99	□□□□□ -0.81
PTPN7-204	ENST00000462815	COQ9	O75208	318 aa		9.99	□□□□□ -0.81
PTPN7-204	ENST00000462815	CRLF1	O75462	422 aa		9.99	□□□□□ -0.81
PTPN7-204	ENST00000462815	SLITRK5	O94991	958 aa		9.99	□□□□□ -0.81
PTPN7-204	ENST00000462815	ESRRB	O95718	433 aa		9.99	□□□□□ -0.81
PTPN7-204	ENST00000462815	KRT6A	P02538	564 aa		9.99	□□□□□ -0.81
PTPN7-204	ENST00000462815	KRT6B	P04259	564 aa		9.99	□□□□□ -0.81
PTPN7-204	ENST00000462815	INHBA	P08476	426 aa		9.99	□□□□□ -0.81
PTPN7-204	ENST00000462815	IFI6	P09912	130 aa		9.99	□□□□□ -0.81
PTPN7-204	ENST00000462815	DDC	P20711	480 aa		9.99	□□□□□ -0.81
PTPN7-204	ENST00000462815	KRT20	P35900	424 aa		9.99	□□□□□ -0.81
PTPN7-204	ENST00000462815	KRT6C	P48668	564 aa		9.99	□□□□□ -0.81
PTPN7-204	ENST00000462815	SERPINB9	P50453	376 aa		9.99	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms