RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 M0R233 179 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 DUX1O43812 170 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 KDM4BO94953 1096 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 SMIM18P0DKX4 95 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 GTF2F2P13984 249 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 LHCGRP22888 699 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 LEXMQ3ZCV2 418 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 TMEM225Q6GV28 225 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 LEG1Q6P5S2 330 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 GPAT4Q86UL3 456 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 SYNPOQ8N3V7 929 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 SLC38A5Q8WUX1 472 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 TANKQ92844 425 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 PNPLA2Q96AD5 504 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 ARRDC3Q96B67 414 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 METTL8Q9H825 291 aaKnown RBP13.91□□□□□ -0.18
PTPRU-205ENST00000460170 TNFRSF12AQ9NP84 129 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 TSPAN4O14817 238 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 H2BFMP0C1H6 154 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 AHRP35869 848 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 FRKP42685 505 aaPredicted RBP13.91□□□□□ -0.18
PTPRU-205ENST00000460170 ADARB1P78563 741 aaKnown RBP13.91□□□□□ -0.18
PTPRU-205ENST00000460170 DESI1Q6ICB0 168 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 FAM83HQ6ZRV2 1179 aaPredicted RBP13.91□□□□□ -0.18
PTPRU-205ENST00000460170 OR7D2Q96RA2 312 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 INSM2Q96T92 566 aaPredicted RBP13.91□□□□□ -0.18
PTPRU-205ENST00000460170 CDCA3Q99618 268 aaPredicted RBP13.91□□□□□ -0.18
PTPRU-205ENST00000460170 ALOXE3Q9BYJ1 711 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 ZBP1Q9H171 429 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 RDH8Q9NYR8 311 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 CDK5RAP2Q96SN8 1893 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 SNAPC5O75971 98 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 DNASE1P24855 282 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 CTXN1P60606 82 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 CNIH2Q6PI25 160 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 ADAMTS19Q8TE59 1207 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 NXPE2Q96DL1 559 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 HRASLS5Q96KN8 279 aa13.91□□□□□ -0.18
PTPRU-205ENST00000460170 UHRF1Q96T88 793 aaPredicted RBP13.91□□□□□ -0.18
PTPRU-205ENST00000460170 GKN3PP0CG01 181 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 NKX2-5P52952 324 aaPredicted RBP13.9□□□□□ -0.18
PTPRU-205ENST00000460170 PRKCDQ05655 676 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 ZNF615Q8N8J6 731 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 EPHX3Q9H6B9 360 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 NUMA1Q14980 2115 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 I6L893 689 aaPredicted RBP13.9□□□□□ -0.18
PTPRU-205ENST00000460170 LYRM1O43325 122 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 PIP5KL1Q5T9C9 394 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 LRFN4Q6PJG9 635 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 RBM12BQ8IXT5 1001 aaKnown RBP13.9□□□□□ -0.18
PTPRU-205ENST00000460170 LILRA3Q8N6C8 439 aaPredicted RBP13.9□□□□□ -0.18
PTPRU-205ENST00000460170 TBC1D15Q8TC07 691 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 MAB21L2Q9Y586 359 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 GASTP01350 101 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 IFNA21P01568 189 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 S100A6P06703 90 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 PROS1P07225 676 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 USP53Q70EK8 1073 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 SPERTQ8NA61 448 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 ASB15Q8WXK1 588 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 ATG5Q9H1Y0 275 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 NKX2-4Q9H2Z4 354 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 RNF121Q9H920 327 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 GMEB2Q9UKD1 530 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 PADI2Q9Y2J8 665 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 CNTRLQ7Z7A1 2325 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 TRBV4-1A0A0J9YWV2 114 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 A0A1W2PPL8 197 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 NOTOA8MTQ0 251 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 MAN2B1O00754 1011 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 ZNF208O43345 1280 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 ERP29P30040 261 aaKnown RBP13.9□□□□□ -0.18
PTPRU-205ENST00000460170 SNTA1Q13424 505 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 TBPL2Q6SJ96 375 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 TIGD4Q8IY51 512 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 THAP3Q8WTV1 239 aaPredicted RBP13.9□□□□□ -0.18
PTPRU-205ENST00000460170 ALKBH4Q9NXW9 302 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 CLEC4EQ9ULY5 219 aa13.9□□□□□ -0.18
PTPRU-205ENST00000460170 A0A0J9YY10 115 aa13.89□□□□□ -0.19
PTPRU-205ENST00000460170 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.89□□□□□ -0.19
PTPRU-205ENST00000460170 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.89□□□□□ -0.19
PTPRU-205ENST00000460170 RDH16O75452 317 aa13.89□□□□□ -0.19
PTPRU-205ENST00000460170 PRH1P02810 166 aa13.89□□□□□ -0.19
PTPRU-205ENST00000460170 GJA4P35212 333 aa13.89□□□□□ -0.19
PTPRU-205ENST00000460170 HNRNPKP61978 463 aaKnown RBP eCLIP13.89□□□□□ -0.191e-9■■■■□ 25.8
PTPRU-205ENST00000460170 MLLT11Q13015 90 aaPredicted RBP13.89□□□□□ -0.19
PTPRU-205ENST00000460170 SERTAD2Q14140 314 aa13.89□□□□□ -0.19
PTPRU-205ENST00000460170 DCST2Q5T1A1 773 aa13.89□□□□□ -0.19
PTPRU-205ENST00000460170 FCRLBQ6BAA4 426 aa13.89□□□□□ -0.19
PTPRU-205ENST00000460170 Q6ZSR6 202 aa13.89□□□□□ -0.19
PTPRU-205ENST00000460170 WDR53Q7Z5U6 358 aaPredicted RBP13.89□□□□□ -0.19
PTPRU-205ENST00000460170 VRK2Q86Y07 508 aa13.89□□□□□ -0.19
PTPRU-205ENST00000460170 SPNS2Q8IVW8 549 aa13.89□□□□□ -0.19
PTPRU-205ENST00000460170 TMEM163Q8TC26 289 aa13.89□□□□□ -0.19
PTPRU-205ENST00000460170 PHOSPHO2Q8TCD6 241 aa13.89□□□□□ -0.19
PTPRU-205ENST00000460170 NUDT8Q8WV74 236 aa13.89□□□□□ -0.19
PTPRU-205ENST00000460170 SPRYD4Q8WW59 207 aaPredicted RBP13.89□□□□□ -0.19
PTPRU-205ENST00000460170 MNTQ99583 582 aa13.89□□□□□ -0.19
PTPRU-205ENST00000460170 DDX31Q9H8H2 851 aaKnown RBP13.89□□□□□ -0.19
PTPRU-205ENST00000460170 SACM1LQ9NTJ5 587 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms