RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 EXT1Q16394 746 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 CARTPTQ16568 116 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 BSXQ3C1V8 233 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 LRRC24Q50LG9 513 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 ARMCX4Q5H9R4 360 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 PRAMEF7Q5VXH5 474 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 MEDAGQ5VYS4 303 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 SLX4IPQ5VYV7 408 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 TTC23Q5W5X9 447 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 FRMPD2BQ6IN97 320 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 ZNF544Q6NX49 715 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 SLC27A1Q6PCB7 646 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 DOK6Q6PKX4 331 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 DLK2Q6UY11 383 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 ZNF562Q6V9R5 426 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 Q6YL49 198 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 CCNI2Q6ZMN8 369 aaPredicted RBP5.04□□□□□ -1.6
VPS41-209ENST00000457055 DPPA4Q7L190 304 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 DOK3Q7L591 496 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 CTU1Q7Z7A3 348 aaKnown RBP5.04□□□□□ -1.6
VPS41-209ENST00000457055 ZNF546Q86UE3 836 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 NT5DC3Q86UY8 548 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 RALGPS2Q86X27 583 aaPredicted RBP5.04□□□□□ -1.6
VPS41-209ENST00000457055 GTPBP8Q8N3Z3 284 aaPredicted RBP5.04□□□□□ -1.6
VPS41-209ENST00000457055 FAM109AQ8N4B1 249 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 SPATA6LQ8N4H0 392 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 CCDC71LQ8N9Z2 235 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 OR5D13Q8NGL4 314 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 HOXB13Q92826 284 aaPredicted RBP5.04□□□□□ -1.6
VPS41-209ENST00000457055 GLG1Q92896 1179 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 EMG1Q92979 244 aaKnown RBP5.04□□□□□ -1.6
VPS41-209ENST00000457055 CAVIN3Q969G5 261 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 EXOSC8Q96B26 276 aaKnown RBP5.04□□□□□ -1.6
VPS41-209ENST00000457055 SPSB1Q96BD6 273 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 NXPE2Q96DL1 559 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 SFXN2Q96NB2 322 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 MCCC1Q96RQ3 725 aaPredicted RBP5.04□□□□□ -1.6
VPS41-209ENST00000457055 CCT8L2Q96SF2 557 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 NPAS1Q99742 590 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 C2orf88Q9BSF0 95 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 NDC1Q9BTX1 674 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 NMNAT2Q9BZQ4 307 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 PLK3Q9H4B4 646 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 EBF3Q9H4W6 596 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 ELOVL6Q9H5J4 265 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 MCCC2Q9HCC0 563 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 RAVER2Q9HCJ3 691 aaKnown RBP5.04□□□□□ -1.6
VPS41-209ENST00000457055 LYRM4Q9HD34 91 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 CD209Q9NNX6 404 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 FBXO8Q9NRD0 319 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 RGS18Q9NS28 235 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 ABCC13Q9NSE7 274 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 MIOSQ9NXC5 875 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 TEX10Q9NXF1 929 aaPredicted RBP5.04□□□□□ -1.6
VPS41-209ENST00000457055 OPN4Q9UHM6 478 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 HACL1Q9UJ83 578 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 ANAPC7Q9UJX3 599 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 MGAT4AQ9UM21 535 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 PLAGL1Q9UM63 463 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 NEU2Q9Y3R4 380 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 UNC80Q8N2C7 3258 aa5.04□□□□□ -1.6
VPS41-209ENST00000457055 MON2Q7Z3U7 1717 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 A0A1B0GV90 55 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 SH3PXD2BA1X283 911 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 FAM90A7PA6NKC0 464 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 ANKRD30BLA7E2S9 258 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 FAM90A22PA8MWA6 464 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 FAM90A12PA8MX19 464 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 FAM90A23PA8MXZ1 464 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 TMEM233B4DJY2 109 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 MCIDASD6RGH6 385 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 POC1B-GALNT4F8VUJ3 575 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 RNASEK-C17orf49H0YIS7 233 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 MKRN2OSH3BPM6 223 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 SGK494L7N484 410 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 RAB27BO00194 218 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 CCRL2O00421 344 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 SLC22A2O15244 555 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 NDUFS4O43181 175 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 LIASO43766 372 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 SRP72O76094 671 aaKnown RBP5.03□□□□□ -1.6
VPS41-209ENST00000457055 STBD1O95210 358 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 H6PDO95479 791 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 VIPP01282 170 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 RPN2P04844 631 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 HEXAP06865 529 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 CHRNGP07510 517 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 CDH1P12830 882 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 DAOP14920 347 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 MALP21145 153 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 ELAVL4P26378 380 aaKnown RBP5.03□□□□□ -1.6
VPS41-209ENST00000457055 EPHB2P29323 1055 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 C21orf33P30042 268 aaPredicted RBP5.03□□□□□ -1.6
VPS41-209ENST00000457055 SLC6A4P31645 630 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 FCGR2BP31994 310 aaPredicted RBP5.03□□□□□ -1.6
VPS41-209ENST00000457055 ADRA1AP35348 466 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 AHRP35869 848 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 UGT2B10P36537 528 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 MMP12P39900 470 aa5.03□□□□□ -1.6
VPS41-209ENST00000457055 CEACAM3P40198 252 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms