RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 ZCCHC3Q9NUD5 404 aaKnown RBP11.59□□□□□ -0.55
PRPF40A-203ENST00000448428 THAP1Q9NVV9 213 aa11.59□□□□□ -0.55
PRPF40A-203ENST00000448428 FBXO34Q9NWN3 711 aa11.59□□□□□ -0.55
PRPF40A-203ENST00000448428 FAM120CQ9NX05 1096 aaKnown RBP11.59□□□□□ -0.55
PRPF40A-203ENST00000448428 Q9UFV3 132 aa11.59□□□□□ -0.55
PRPF40A-203ENST00000448428 MRPS18CQ9Y3D5 142 aaKnown RBP11.59□□□□□ -0.55
PRPF40A-203ENST00000448428 SNX8Q9Y5X2 465 aa11.59□□□□□ -0.55
PRPF40A-203ENST00000448428 KDM4EB2RXH2 506 aaPredicted RBP11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 ANKRD28O15084 1053 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 CFLARO15519 480 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 ZIC3O60481 467 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 KCNK2O95069 426 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 UTS2O95399 124 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 EPPINO95925 133 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 ACTL6AO96019 429 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 HMGN2P05204 90 aaKnown RBP11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 ALOX5P09917 674 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 LBPP18428 481 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 SRD5A2P31213 254 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 PTGER4P35408 488 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 PRIM2P49643 509 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 PSMD4P55036 377 aaKnown RBP11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 HBA1P69905 142 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 PRR5P85299 388 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 GRAMD1BQ3KR37 738 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 ATG16L1Q676U5 607 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 OR4F3Q6IEY1 312 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 FIGNL1Q6PIW4 674 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 APOOLQ6UXV4 268 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 SEM1Q6ZVN7 128 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 CAMKMTQ7Z624 323 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 GALNT10Q86SR1 603 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 WDR75Q8IWA0 830 aaKnown RBP11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 TRIM42Q8IWZ5 723 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 PIAS4Q8N2W9 510 aaPredicted RBP11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 FADS6Q8N9I5 356 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 OR14L1PQ8NHC6 308 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 DUSP19Q8WTR2 217 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 OTUB1Q96FW1 271 aaPredicted RBP11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 DSN1Q9H410 356 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 SDHAF3Q9NRP4 125 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 TAS2R10Q9NYW0 307 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 PPP4R1LQ9P1A2 415 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 ABCG2Q9UNQ0 655 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 CAMK2AQ9UQM7 478 aa11.58□□□□□ -0.56
PRPF40A-203ENST00000448428 NKX2-6A6NCS4 301 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 SDHDO14521 159 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 TOXO94900 526 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 SNRPB2P08579 225 aaKnown RBP11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 KITP10721 976 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 PRF1P14222 555 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 DPP4P27487 766 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 ZFP36L2P47974 494 aaKnown RBP11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 CLK3P49761 638 aaKnown RBP11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 GFRA1P56159 465 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 WNT3P56703 355 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 PHC1P78364 1004 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 STX5Q13190 355 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 TP53BP2Q13625 1128 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 LASP1Q14847 261 aaKnown RBP11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 ZAR1Q86SH2 424 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 IFNEQ86WN2 208 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 LIX1LQ8IVB5 337 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 PM20D2Q8IYS1 436 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 LRRC34Q8IZ02 419 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 CLECL1Q8IZS7 167 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 OR2M3Q8NG83 312 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 OR4K17Q8NGC6 315 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 OR8J2Q8NGG1 315 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 OR4C3Q8NH37 302 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 RAB3IL1Q8TBN0 382 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 JADE3Q92613 823 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 BTBD2Q9BX70 525 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 ACTRT3Q9BYD9 372 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 DPY30Q9C005 99 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 PIGUQ9H490 435 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 WDR55Q9H6Y2 383 aaPredicted RBP11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 KCNJ16Q9NPI9 418 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 GPATCH2Q9NW75 528 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 MED11Q9P086 117 aa11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 MARCOQ9UEW3 520 aaPredicted RBP11.57□□□□□ -0.56
PRPF40A-203ENST00000448428 FAM90A27PA6NNH2 459 aa11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 HDAC3O15379 428 aa11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 SCN2BO60939 215 aa11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 ALDOCP09972 364 aaKnown RBP11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 CPN1P15169 458 aa11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 TBXA2RP21731 343 aa11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 TCEA1P23193 301 aaKnown RBP11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 EPHA3P29320 983 aa11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 GCKP35557 465 aa11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 STARP49675 285 aa11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 DSCR4P56555 118 aaPredicted RBP11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 B3GALT5-AS1P59052 145 aa11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 POU6F2P78424 691 aaPredicted RBP11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 OCRLQ01968 901 aa11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 C17orf67Q0P5P2 114 aa11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 SPDYE7PQ495Y7 208 aa11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 ACSF3Q4G176 576 aaPredicted RBP11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 CCNJQ5T5M9 372 aa11.56□□□□□ -0.56
PRPF40A-203ENST00000448428 RIPPLY2Q5TAB7 128 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms