RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 ELFN2Q5R3F8 820 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 ZNF660Q6AZW8 331 aaPredicted RBP18.03■□□□□ 0.48
HMGA1-205ENST00000447654 SLC30A8Q8IWU4 369 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 BPIFCQ8NFQ6 507 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 RAD51AP1Q96B01 352 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 TEFMQ96QE5 360 aaKnown RBP18.03■□□□□ 0.48
HMGA1-205ENST00000447654 FAIM2Q9BWQ8 316 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 SEBOXQ9HB31 216 aaPredicted RBP18.03■□□□□ 0.48
HMGA1-205ENST00000447654 RDH14Q9HBH5 336 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 SARS2Q9NP81 518 aaKnown RBP18.03■□□□□ 0.48
HMGA1-205ENST00000447654 NIT2Q9NQR4 276 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 EXOSC3Q9NQT5 275 aaKnown RBP18.03■□□□□ 0.48
HMGA1-205ENST00000447654 POLE3Q9NRF9 147 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 MRTO4Q9UKD2 239 aaKnown RBP18.03■□□□□ 0.48
HMGA1-205ENST00000447654 ACSL6Q9UKU0 697 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 J3KTA2 159 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 SCAMP1O15126 338 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 CTDSPLO15194 276 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 PRODHO43272 600 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 IFNW1P05000 195 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 TACR2P21452 398 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 SNTB1Q13884 538 aaKnown RBP18.03■□□□□ 0.48
HMGA1-205ENST00000447654 GUCA2BQ16661 112 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 GCNT6Q5T4J0 391 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 ARMC12Q5T9G4 340 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 CAMKMTQ7Z624 323 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 SYT12Q8IV01 421 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 OR4K2Q8NGD2 314 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 ASB13Q8WXK3 278 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 FGF11Q92914 225 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 MAL2Q969L2 176 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 RGMAQ96B86 450 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 EGFL8Q99944 293 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 SEMA3CQ99985 751 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 PIGMQ9H3S5 423 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 NLGN3Q9NZ94 848 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 TSR3Q9UJK0 312 aaKnown RBP18.03■□□□□ 0.48
HMGA1-205ENST00000447654 FBXL3Q9UKT7 428 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 SLC9A8Q9Y2E8 581 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 CHD5Q8TDI0 1954 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 SNRPGP15A8MWD9 76 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 DISC1C4P0D8 188 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 NEDD8-MDP1E9PL57 170 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 EFEMP2O95967 443 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 SPP1P10451 314 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 SELLP14151 372 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 FOLR2P14207 255 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 OR1D2P34982 312 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 CCR6P51684 374 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 SGSHP51688 502 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 KLF9Q13886 244 aaPredicted RBP18.02■□□□□ 0.48
HMGA1-205ENST00000447654 NDUFA9Q16795 377 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 FAM76BQ5HYJ3 339 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 CD300LDQ6UXZ3 194 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 BEND4Q6ZU67 534 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 TMCO2Q7Z6W1 182 aaPredicted RBP18.02■□□□□ 0.48
HMGA1-205ENST00000447654 DEFB128Q7Z7B8 93 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 NAGSQ8N159 534 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 SAMD12Q8N8I0 201 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 TRMT2BQ96GJ1 504 aaKnown RBP18.02■□□□□ 0.48
HMGA1-205ENST00000447654 DMRTA2Q96SC8 542 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 TSNAXQ99598 290 aaKnown RBP18.02■□□□□ 0.48
HMGA1-205ENST00000447654 PAPOLGQ9BWT3 736 aaKnown RBP18.02■□□□□ 0.48
HMGA1-205ENST00000447654 TAS2R3Q9NYW6 316 aa18.02■□□□□ 0.48
HMGA1-205ENST00000447654 A0A1W2PRB8 838 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 RAB19A4D1S5 217 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 ZNF729A6NN14 1252 aaPredicted RBP18.01■□□□□ 0.47
HMGA1-205ENST00000447654 EFCAB7A8K855 629 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 LRRN3E7EW58 273 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 H3BN98 237 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 CACNB4O00305 520 aaPredicted RBP18.01■□□□□ 0.47
HMGA1-205ENST00000447654 TLX2O43763 284 aaPredicted RBP18.01■□□□□ 0.47
HMGA1-205ENST00000447654 CDC123O75794 336 aaPredicted RBP18.01■□□□□ 0.47
HMGA1-205ENST00000447654 EFNB1P98172 346 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 RING1Q06587 406 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 SCARB2Q14108 478 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 KRT33BQ14525 404 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 MINDY4Q4G0A6 757 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 MPPE1Q53F39 396 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 ALG1LQ6GMV1 187 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 TPRA1Q86W33 373 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 CLECL1Q8IZS7 167 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 WBP2Q969T9 261 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 ZDHHC12Q96GR4 267 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 DUSP26Q9BV47 211 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 ARL6Q9H0F7 186 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 POLR2J3Q9H1A7 115 aaKnown RBP18.01■□□□□ 0.47
HMGA1-205ENST00000447654 P2RY12Q9H244 342 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 LRRN3Q9H3W5 708 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 PDFQ9HBH1 243 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 GPN1Q9HCN4 374 aaPredicted RBP18.01■□□□□ 0.47
HMGA1-205ENST00000447654 C2orf74A8MZ97 194 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 LCMT2O60294 686 aaKnown RBP18.01■□□□□ 0.47
HMGA1-205ENST00000447654 KLKB1P03952 638 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 OPN1SWP03999 348 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 IL5P05113 134 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 PIRTP0C851 137 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 UBBP0CG47 229 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 UBCP0CG48 685 aaKnown RBP18.01■□□□□ 0.47
HMGA1-205ENST00000447654 LIMS3P0CW19 117 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms