RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 KATNAL2Q8IYT4 538 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 GPC2Q8N158 579 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 NAGSQ8N159 534 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 TMEM35BQ8NCS4 154 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 BBOF1Q8ND07 529 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 KBTBD8Q8NFY9 601 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 OR52B4Q8NGK2 314 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 OR13A1Q8NGR1 328 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 GANCQ8TET4 914 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 TCP11Q8WWU5 503 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 ZNF606Q8WXB4 792 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 TAF15Q92804 592 aaKnown RBP eCLIP3.65□□□□□ -1.83
VPS29-202ENST00000447578 SLCO2A1Q92959 643 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 DCPSQ96C86 337 aaKnown RBP3.65□□□□□ -1.83
VPS29-202ENST00000447578 HAUS1Q96CS2 278 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 BPIFA2Q96DR5 249 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 DTNBP1Q96EV8 351 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 CHMP6Q96FZ7 201 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 SNF8Q96H20 258 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 ANKRD36BP1Q96IX9 119 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 ST6GAL2Q96JF0 529 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 CXorf58Q96LI9 332 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 MCEEQ96PE7 176 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 SSX3Q99909 188 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 STMN4Q9H169 189 aaPredicted RBP3.65□□□□□ -1.83
VPS29-202ENST00000447578 TMEM231Q9H6L2 316 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 EGLN3Q9H6Z9 239 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 CISHQ9NSE2 258 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 INTS9Q9NV88 658 aaKnown RBP3.65□□□□□ -1.83
VPS29-202ENST00000447578 PARVAQ9NVD7 372 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 TBC1D13Q9NVG8 400 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 OR6C2Q9NZP2 312 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 RABL2BQ9UNT1 228 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 SATB2Q9UPW6 733 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 ENTPD4Q9Y227 616 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 IKBKGQ9Y6K9 419 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 U3KQV3 271 aa3.65□□□□□ -1.83
VPS29-202ENST00000447578 SYNJ2BP-COX16A0A087WUM0 186 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 GOLGA6L7A0A1B0GV03 622 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 F8VP50 259 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 H0YHG0 523 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 GOLGA8SH3BPF8 625 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 MCF2LO15068 1137 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 B4GALT5O43286 388 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 MED7O43513 233 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 LSM8O95777 96 aaKnown RBP3.64□□□□□ -1.83
VPS29-202ENST00000447578 TTC4O95801 387 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 SLC25A27O95847 323 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 FRMD6-AS1P0C7T7 363 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 ZSCAN5DPP0CG00 497 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 CFC1BP0CG36 223 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 CFC1P0CG37 223 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 LIFP15018 202 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 ANPEPP15144 967 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 CYP2F1P24903 491 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 PSMA2P25787 234 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 CEACAM8P31997 349 aaPredicted RBP3.64□□□□□ -1.83
VPS29-202ENST00000447578 TNFRSF4P43489 277 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 TRPC1P48995 793 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 ARFIP1P53367 373 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 YWHAEP62258 255 aaKnown RBP3.64□□□□□ -1.83
VPS29-202ENST00000447578 OGDHQ02218 1023 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 BTG3Q14201 252 aaPredicted RBP3.64□□□□□ -1.83
VPS29-202ENST00000447578 PIGHQ14442 188 aaPredicted RBP3.64□□□□□ -1.83
VPS29-202ENST00000447578 MXD4Q14582 209 aaPredicted RBP3.64□□□□□ -1.83
VPS29-202ENST00000447578 RBBP5Q15291 538 aaKnown RBP3.64□□□□□ -1.83
VPS29-202ENST00000447578 EXT1Q16394 746 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 HSDL1Q3SXM5 330 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 CELF3Q5SZQ8 465 aaKnown RBP3.64□□□□□ -1.83
VPS29-202ENST00000447578 RIPPLY2Q5TAB7 128 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 LYPLAL1Q5VWZ2 237 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 NKAIN2Q5VXU1 208 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 ZNF776Q68DI1 518 aaPredicted RBP3.64□□□□□ -1.83
VPS29-202ENST00000447578 HIST2H2AA3Q6FI13 130 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 DCUN1D2Q6PH85 259 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 C6orf89Q6UWU4 347 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 ARSKQ6UWY0 536 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 RGS9BPQ6ZS82 235 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 CCDC121Q6ZUS5 278 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 RFPL4BQ6ZWI9 263 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 CYP4V2Q6ZWL3 525 aaPredicted RBP3.64□□□□□ -1.83
VPS29-202ENST00000447578 MOB2Q70IA6 237 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 SLC24A5Q71RS6 500 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 TRMT11Q7Z4G4 463 aaKnown RBP3.64□□□□□ -1.83
VPS29-202ENST00000447578 CDR2LQ86X02 465 aaPredicted RBP3.64□□□□□ -1.83
VPS29-202ENST00000447578 ERICH1Q86X53 443 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 LRRC34Q8IZ02 419 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 SLC43A2Q8N370 569 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 LRRC17Q8N6Y2 441 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 TCEANCQ8N8B7 351 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 CCDC197Q8NCU1 140 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 DMBX1Q8NFW5 382 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 OR4L1Q8NH43 312 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 DYDC1Q8WWB3 177 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 GLYATL1Q969I3 302 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 RAB7BQ96AH8 199 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 C9orf72Q96LT7 481 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 NECTIN4Q96NY8 510 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 SERPINB12Q96P63 405 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 NEDD4LQ96PU5 975 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms