RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 IQCGQ9H095 443 aaKnown RBP18.78■□□□□ 0.6
SDC1-205ENST00000447124 LIME1Q9H400 295 aa18.78■□□□□ 0.6
SDC1-205ENST00000447124 ROPN1Q9HAT0 212 aaPredicted RBP18.78■□□□□ 0.6
SDC1-205ENST00000447124 NTMQ9P121 344 aa18.78■□□□□ 0.6
SDC1-205ENST00000447124 MED13LQ71F56 2210 aa18.78■□□□□ 0.6
SDC1-205ENST00000447124 PIP5K1BO14986 540 aa18.77■□□□□ 0.6
SDC1-205ENST00000447124 NEFHP12036 1026 aa18.77■□□□□ 0.6
SDC1-205ENST00000447124 BCKDHAP12694 445 aa18.77■□□□□ 0.6
SDC1-205ENST00000447124 EFNA1P20827 205 aaPredicted RBP18.77■□□□□ 0.6
SDC1-205ENST00000447124 RFX3P48380 749 aa18.77■□□□□ 0.6
SDC1-205ENST00000447124 PRKAG1P54619 331 aa18.77■□□□□ 0.6
SDC1-205ENST00000447124 STX5Q13190 355 aa18.77■□□□□ 0.6
SDC1-205ENST00000447124 BCL2A1Q16548 175 aa18.77■□□□□ 0.6
SDC1-205ENST00000447124 GALNTL6Q49A17 601 aa18.77■□□□□ 0.6
SDC1-205ENST00000447124 OR5M1Q8NGP8 315 aa18.77■□□□□ 0.6
SDC1-205ENST00000447124 OR6Y1Q8NGX8 325 aa18.77■□□□□ 0.6
SDC1-205ENST00000447124 LINC01560Q8TB33 94 aa18.77■□□□□ 0.6
SDC1-205ENST00000447124 FAM222BQ8WU58 562 aa18.77■□□□□ 0.6
SDC1-205ENST00000447124 NUDT8Q8WV74 236 aa18.77■□□□□ 0.6
SDC1-205ENST00000447124 PPCDCQ96CD2 204 aa18.77■□□□□ 0.6
SDC1-205ENST00000447124 C3orf30Q96M34 536 aa18.77■□□□□ 0.6
SDC1-205ENST00000447124 EQTNQ9NQ60 294 aa18.77■□□□□ 0.6
SDC1-205ENST00000447124 RASSF1Q9NS23 344 aa18.77■□□□□ 0.6
SDC1-205ENST00000447124 FAM120CQ9NX05 1096 aaKnown RBP18.77■□□□□ 0.6
SDC1-205ENST00000447124 FOXD3Q9UJU5 478 aaPredicted RBP18.77■□□□□ 0.6
SDC1-205ENST00000447124 HCRTR2O43614 444 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 NKX2-2O95096 273 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 UTS2O95399 124 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 CHEK2O96017 543 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 HK1P19367 917 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 GPC1P35052 558 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 PEX19P40855 299 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 SUCLG1P53597 346 aaKnown RBP18.76■□□□□ 0.59
SDC1-205ENST00000447124 MANFP55145 182 aaKnown RBP18.76■□□□□ 0.59
SDC1-205ENST00000447124 DAZAP2Q15038 168 aaPredicted RBP18.76■□□□□ 0.59
SDC1-205ENST00000447124 ZNHIT3Q15649 155 aaPredicted RBP18.76■□□□□ 0.59
SDC1-205ENST00000447124 FLYWCH1Q4VC44 716 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 SPNS3Q6ZMD2 512 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 DDIASQ8IXT1 998 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 NUP43Q8NFH3 380 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 FAM110BQ8TC76 370 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 C16orf58Q96GQ5 468 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 TM9SF2Q99805 663 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 POLDIP3Q9BY77 421 aaKnown RBP18.76■□□□□ 0.59
SDC1-205ENST00000447124 SDHAF3Q9NRP4 125 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 ACSS1Q9NUB1 689 aaPredicted RBP18.76■□□□□ 0.59
SDC1-205ENST00000447124 ZDHHC2Q9UIJ5 367 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 ABCG2Q9UNQ0 655 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 TMED5Q9Y3A6 229 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 ZNF337Q9Y3M9 751 aa18.76■□□□□ 0.59
SDC1-205ENST00000447124 NUP214P35658 2090 aaPredicted RBP18.75■□□□□ 0.59
SDC1-205ENST00000447124 TTC36A6NLP5 189 aa18.75■□□□□ 0.59
SDC1-205ENST00000447124 EEF1E1-BLOC1S5C9J1V9 151 aa18.75■□□□□ 0.59
SDC1-205ENST00000447124 H0YC42 278 aa18.75■□□□□ 0.59
SDC1-205ENST00000447124 EEF1E1O43324 174 aaKnown RBP18.75■□□□□ 0.59
SDC1-205ENST00000447124 ACP2P11117 423 aa18.75■□□□□ 0.59
SDC1-205ENST00000447124 TPD52P55327 224 aaPredicted RBP18.75■□□□□ 0.59
SDC1-205ENST00000447124 IFFO1Q0D2I5 559 aa18.75■□□□□ 0.59
SDC1-205ENST00000447124 GRAMD1BQ3KR37 738 aa18.75■□□□□ 0.59
SDC1-205ENST00000447124 ZAR1Q86SH2 424 aa18.75■□□□□ 0.59
SDC1-205ENST00000447124 GALNT10Q86SR1 603 aa18.75■□□□□ 0.59
SDC1-205ENST00000447124 GCNT2Q8N0V5 402 aa18.75■□□□□ 0.59
SDC1-205ENST00000447124 SLC16A11Q8NCK7 471 aa18.75■□□□□ 0.59
SDC1-205ENST00000447124 CEP70Q8NHQ1 597 aa18.75■□□□□ 0.59
SDC1-205ENST00000447124 AGR3Q8TD06 166 aa18.75■□□□□ 0.59
SDC1-205ENST00000447124 GPR151Q8TDV0 419 aa18.75■□□□□ 0.59
SDC1-205ENST00000447124 ZBED6CLQ96FA7 236 aaPredicted RBP18.75■□□□□ 0.59
SDC1-205ENST00000447124 LRRC46Q96FV0 321 aa18.75■□□□□ 0.59
SDC1-205ENST00000447124 RMND5BQ96G75 393 aaPredicted RBP18.75■□□□□ 0.59
SDC1-205ENST00000447124 FBXO34Q9NWN3 711 aa18.75■□□□□ 0.59
SDC1-205ENST00000447124 ATP6V1HQ9UI12 483 aa18.75■□□□□ 0.59
SDC1-205ENST00000447124 MRTO4Q9UKD2 239 aaKnown RBP18.75■□□□□ 0.59
SDC1-205ENST00000447124 A6NNC1 897 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 TYROBPO43914 113 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 PEX11AO75192 247 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 SLU7O95391 586 aaKnown RBP18.74■□□□□ 0.59
SDC1-205ENST00000447124 ANGPTL1O95841 491 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 BPGMP07738 259 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 PEPDP12955 493 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 ETV4P43268 484 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 IST1P53990 364 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 PRR5P85299 388 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 XKR7Q5GH72 579 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 EXOSC6Q5RKV6 272 aaKnown RBP18.74■□□□□ 0.59
SDC1-205ENST00000447124 CDRT4Q8N9R6 151 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 OR7A2PQ8NGA2 310 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 OR4C3Q8NH37 302 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 ZFP28Q8NHY6 868 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 CAVIN3Q969G5 261 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 C1GALT1C1Q96EU7 318 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 DTNBP1Q96EV8 351 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 ZFP3Q96NJ6 502 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 SFXN3Q9BWM7 321 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 C3orf14Q9HBI5 128 aa18.74■□□□□ 0.59
SDC1-205ENST00000447124 EML4Q9HC35 981 aaKnown RBP18.74■□□□□ 0.59
SDC1-205ENST00000447124 SIRT3Q9NTG7 399 aaPredicted RBP18.74■□□□□ 0.59
SDC1-205ENST00000447124 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.74■□□□□ 0.597e-7■□□□□ 9.8
SDC1-205ENST00000447124 V9GYY5 206 aaPredicted RBP18.74■□□□□ 0.59
SDC1-205ENST00000447124 IGLV3-32A0A0A0MS00 114 aa18.73■□□□□ 0.59
SDC1-205ENST00000447124 TNFSF12-TNFSF13A0A0A6YY99 330 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms