RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 MCCC2Q9HCC0 563 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 EQTNQ9NQ60 294 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 DUSP22Q9NRW4 184 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 DLGAP4Q9Y2H0 992 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 LOC100509620A0A075B734 347 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 ZNF587BE7ETH6 402 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 BOLA2-SMG1P6H3BVE0 249 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 AMY2AP04746 511 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 CHRM2P08172 466 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 RAB30Q15771 203 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 ABHD12BQ7Z5M8 362 aaPredicted RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 APH1BQ8WW43 257 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 FBXL20Q96IG2 436 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 DGAT2Q96PD7 388 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 MICU1Q9BPX6 476 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 DNMT3AQ9Y6K1 912 aaPredicted RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 ZNF407Q9C0G0 2248 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 TBC1D3KA0A087X1G2 549 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 TBC1D3FA6NER0 549 aaPredicted RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 VILLO15195 856 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 NAT2P11245 290 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 CTHP32929 405 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 TBC1D3GQ6DHY5 549 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 ANKRD16Q6P6B7 361 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 LHPPQ9H008 270 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 K7EPK0 472 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 M0R143 59 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 NCK1P16333 377 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 CX3CR1P49238 355 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 CHRNA6Q15825 494 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 C22orf42Q6IC83 251 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 DPPA2Q7Z7J5 298 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 ANKRD46Q86W74 232 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 FAM71E2Q8N5Q1 922 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 C7orf34Q96L11 122 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 DHRS4Q9BTZ2 278 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 ICMTO60725 284 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 MMP3P08254 477 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 PGCP20142 388 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 SLBPQ14493 270 aaKnown RBP eCLIP6.83□□□□□ -1.32
VPS53-204ENST00000437048 OR9A1PQ8NGU1 263 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 DCUN1D4Q92564 292 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 PCYT2Q99447 389 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 MUTYHQ9UIF7 546 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 TIMM22Q9Y584 194 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 SHROOM3Q8TF72 1996 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 LAMA4Q16363 1823 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 A0A087WZY1 265 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 TRDV1A0A1B0GX56 115 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 SDHDO14521 159 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 DPEP1P16444 411 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 HTR2CP28335 458 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 ZNF74Q16587 644 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 ACOT6Q3I5F7 207 aaPredicted RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 OR6F1Q8NGZ6 308 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 RNF170Q96K19 258 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 MCHR1Q99705 422 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 SLC29A1Q99808 456 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 ZDHHC2Q9UIJ5 367 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 BET1O15155 118 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 SCGB1D2O95969 90 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 DAP3P51398 398 aaKnown RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 SNRPGP62308 76 aaKnown RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 ERVK-25P63136 954 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 DYRK1AQ13627 763 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 ZFP82Q8N141 532 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 DUS3LQ96G46 650 aaKnown RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 DHRS1Q96LJ7 313 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 SRMSQ9H3Y6 488 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 CLEC4EQ9ULY5 219 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 NOX1Q9Y5S8 564 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 K7EQM0 130 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 LILRA4P59901 499 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 DCAF4L2Q8NA75 395 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 PLA2G15Q8NCC3 412 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 ADAMTS6Q9UKP5 1117 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 SCML2Q9UQR0 700 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 PCDHAC2Q9Y5I4 1007 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 MAFBQ9Y5Q3 323 aaPredicted RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 FER1L4A9Z1Z3 1794 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 CSF2P04141 144 aa6.82□□□□□ -1.32
VPS53-204ENST00000437048 SERPINE2P07093 398 aa6.82□□□□□ -1.32
VPS53-204ENST00000437048 PRRC1Q96M27 445 aa6.82□□□□□ -1.32
VPS53-204ENST00000437048 UBL7Q96S82 380 aaPredicted RBP6.82□□□□□ -1.32
VPS53-204ENST00000437048 GPR174Q9BXC1 333 aa6.82□□□□□ -1.32
VPS53-204ENST00000437048 POLDIP3Q9BY77 421 aaKnown RBP6.82□□□□□ -1.32
VPS53-204ENST00000437048 TMPRSS5Q9H3S3 457 aa6.82□□□□□ -1.32
VPS53-204ENST00000437048 SPANXA1Q9NS26 97 aa6.82□□□□□ -1.32
VPS53-204ENST00000437048 ERVK-18Q9QC07 812 aa6.82□□□□□ -1.32
VPS53-204ENST00000437048 SYT5O00445 386 aa6.82□□□□□ -1.32
VPS53-204ENST00000437048 BCHEP06276 602 aa6.82□□□□□ -1.32
VPS53-204ENST00000437048 MLLT10P55197 1068 aa6.82□□□□□ -1.32
VPS53-204ENST00000437048 SERTAD2Q14140 314 aa6.82□□□□□ -1.32
VPS53-204ENST00000437048 HEPHL1Q6MZM0 1159 aa6.82□□□□□ -1.32
VPS53-204ENST00000437048 DAZLQ92904 295 aaKnown RBP6.82□□□□□ -1.32
VPS53-204ENST00000437048 UMAD1C9J7I0 102 aa6.82□□□□□ -1.32
VPS53-204ENST00000437048 ANKRD63C9JTQ0 380 aa6.82□□□□□ -1.32
VPS53-204ENST00000437048 NRP1O14786 923 aa6.82□□□□□ -1.32
VPS53-204ENST00000437048 GBAP04062 536 aa6.82□□□□□ -1.32
VPS53-204ENST00000437048 CTXN2P0C2S0 81 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms