RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 FLOT2Q14254 428 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 SYPL1Q16563 259 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 LIN52Q52LA3 116 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 LRRC23Q53EV4 343 aaPredicted RBP9.32□□□□□ -0.92
CD44-207ENST00000425428 TBCELQ5QJ74 424 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 FCRLBQ6BAA4 426 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 IL20RBQ6UXL0 311 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 RTL4Q6ZR62 310 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 CALHM3Q86XJ0 350 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 HPS6Q86YV9 775 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 ARMC8Q8IUR7 673 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 ZZZ3Q8IYH5 903 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 PRR22Q8IZ63 422 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 EID3Q8N140 333 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 CYP4Z2PQ8N1L4 340 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 ZNF441Q8N8Z8 693 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 PROX1Q92786 737 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 MAL2Q969L2 176 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 EFHD2Q96C19 240 aaPredicted RBP9.32□□□□□ -0.92
CD44-207ENST00000425428 SPACA9Q96E40 222 aaPredicted RBP9.32□□□□□ -0.92
CD44-207ENST00000425428 C5orf34Q96MH7 638 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 SECISBP2Q96T21 854 aaKnown RBP9.32□□□□□ -0.92
CD44-207ENST00000425428 TREX2Q9BQ50 279 aaPredicted RBP9.32□□□□□ -0.92
CD44-207ENST00000425428 MESP1Q9BRJ9 268 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.32□□□□□ -0.92
CD44-207ENST00000425428 EVA1AQ9H8M9 152 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 LIN28AQ9H9Z2 209 aaKnown RBP9.32□□□□□ -0.92
CD44-207ENST00000425428 CPNE5Q9HCH3 593 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 BCL2L10Q9HD36 194 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.32□□□□□ -0.92
CD44-207ENST00000425428 KLRF1Q9NZS2 232 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 CNIH4Q9P003 139 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 ACTR3BQ9P1U1 418 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 EGFL7Q9UHF1 273 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 ZNF223Q9UK11 482 aaPredicted RBP9.32□□□□□ -0.92
CD44-207ENST00000425428 BAG5Q9UL15 447 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 PCDHGB7Q9Y5F8 929 aa9.32□□□□□ -0.92
CD44-207ENST00000425428 MED13Q9UHV7 2174 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 DCHS1Q96JQ0 3298 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 GTPBP1O00178 669 aaKnown RBP9.31□□□□□ -0.92
CD44-207ENST00000425428 SUV39H1O43463 412 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 PRKNO60260 465 aaPredicted RBP9.31□□□□□ -0.92
CD44-207ENST00000425428 NME6O75414 186 aaPredicted RBP9.31□□□□□ -0.92
CD44-207ENST00000425428 ITGB2P05107 769 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 NUDT7P0C024 238 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 CD46P15529 392 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 AQP1P29972 269 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 MAP3K8P41279 467 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 HLCSP50747 726 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 ATP12AP54707 1039 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 Q0VFX4 171 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 MFAP5Q13361 173 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 ZNF311Q5JNZ3 666 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 CCNJQ5T5M9 372 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 SLC22A10Q63ZE4 541 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 NPSR1Q6W5P4 371 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 LINC00696Q6ZRV3 163 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 FKBP9P1Q75LS8 142 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 ASRGL1Q7L266 308 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 MISPQ8IVT2 679 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 ZADH2Q8N4Q0 377 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 ANKFN1Q8N957 763 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 GOLM1Q8NBJ4 401 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 FAM98AQ8NCA5 519 aaKnown RBP9.31□□□□□ -0.92
CD44-207ENST00000425428 OR5M3Q8NGP4 307 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 OR52P1PQ8NH57 321 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 WDR60Q8WVS4 1066 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 UGT2B28Q9BY64 529 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 ZNF350Q9GZX5 532 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 SERHL2Q9H4I8 314 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 LRFN1Q9P244 771 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 CD300AQ9UGN4 299 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 MKLN1Q9UL63 735 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 ABCG2Q9UNQ0 655 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 PCDHGA10Q9Y5H3 936 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 CACNA1AO00555 2505 aa9.31□□□□□ -0.92
CD44-207ENST00000425428 WDFY3Q8IZQ1 3526 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 FAM47E-STBD1D6RA91 191 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 UTS2O95399 124 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 ZNF682O95780 498 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 FBXO45P0C2W1 286 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 NQO1P15559 274 aaKnown RBP9.3□□□□□ -0.92
CD44-207ENST00000425428 GGT1P19440 569 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 WT1P19544 449 aaPredicted RBP9.3□□□□□ -0.92
CD44-207ENST00000425428 KDELR2P33947 212 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 SOX18P35713 384 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 DCTP40126 519 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 SOX3P41225 446 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 CHRNEQ04844 493 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 RAPSNQ13702 412 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 CEACAM7Q14002 265 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 NTRK2Q16620 822 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 CCDC80Q76M96 950 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 EIF3MQ7L2H7 374 aaKnown RBP9.3□□□□□ -0.92
CD44-207ENST00000425428 GPR155Q7Z3F1 870 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 PTOV1Q86YD1 416 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 CMIPQ8IY22 773 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 BEST3Q8N1M1 668 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 ARMC10Q8N2F6 343 aa9.3□□□□□ -0.92
CD44-207ENST00000425428 KDF1Q8NAX2 398 aaPredicted RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms