RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 PIPOXQ9P0Z9 390 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 RPS6KB2Q9UBS0 482 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 BAIAP2Q9UQB8 552 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 ENTPD4Q9Y227 616 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 SLC9A8Q9Y2E8 581 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 LGALS8O00214 317 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 TGM6O95932 706 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 URODP06132 367 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 FCER2P06734 321 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 C4BPBP20851 252 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 TSPAN31Q12999 210 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 TMEM44Q2T9K0 475 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 SLC25A35Q3KQZ1 300 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 RTP2Q5QGT7 225 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 SLC22A10Q63ZE4 541 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 SLC30A6Q6NXT4 461 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 FAM83HQ6ZRV2 1179 aaPredicted RBP10.03□□□□□ -0.8
USP54-204ENST00000422491 RASSF6Q6ZTQ3 369 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 OR2AP1Q8NGE2 309 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 GNPDA2Q8TDQ7 276 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 ZNF480Q8WV37 535 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 THAP4Q8WY91 577 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 OVCA2Q8WZ82 227 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 ELMOD3Q96FG2 381 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 SIPA1Q96FS4 1042 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 EFCAB11Q9BUY7 163 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 SPATA5L1Q9BVQ7 753 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 ZNF416Q9BWM5 594 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 ABCG4Q9H172 646 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 DDX31Q9H8H2 851 aaKnown RBP10.03□□□□□ -0.8
USP54-204ENST00000422491 NPDC1Q9NQX5 325 aaPredicted RBP10.03□□□□□ -0.8
USP54-204ENST00000422491 CNIH4Q9P003 139 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 SPATA2Q9UM82 520 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 TRABD2BA6NFA1 517 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 HYAL3O43820 417 aaPredicted RBP10.02□□□□□ -0.81
USP54-204ENST00000422491 TFP02787 698 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 C1GALT1C1LP0DN25 315 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 TBXA2RP21731 343 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 F8A1P23610 371 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 MANFP55145 182 aaKnown RBP10.02□□□□□ -0.81
USP54-204ENST00000422491 E2F1Q01094 437 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 MEF2AQ02078 507 aaPredicted RBP10.02□□□□□ -0.81
USP54-204ENST00000422491 SNTB2Q13425 540 aaKnown RBP10.02□□□□□ -0.81
USP54-204ENST00000422491 DYRK1AQ13627 763 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 ETFDHQ16134 617 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 ZSWIM7Q19AV6 140 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 LRRC73Q5JTD7 316 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 ZDHHC20Q5W0Z9 365 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 OLIG3Q7RTU3 272 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 TPRA1Q86W33 373 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 BVESQ8NE79 360 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 OR11G2Q8NGC1 345 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 AHCYL2Q96HN2 611 aaKnown RBP10.02□□□□□ -0.81
USP54-204ENST00000422491 FAM83CQ9BQN1 747 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 PELOQ9BRX2 385 aaKnown RBP10.02□□□□□ -0.81
USP54-204ENST00000422491 NEUROD4Q9HD90 331 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 WASH6PQ9NQA3 447 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 BABAM2Q9NXR7 383 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 ATPIF1Q9UII2 106 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 CHST2Q9Y4C5 530 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 TCRBV16S1A1N1A0A5B0 115 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 TMEM88BA6NKF7 163 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 B3GALNT1O75752 331 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 HMGA1P17096 107 aaKnown RBP10.02□□□□□ -0.81
USP54-204ENST00000422491 RAB3AP20336 220 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 MLLT1Q03111 559 aaPredicted RBP10.02□□□□□ -0.81
USP54-204ENST00000422491 CNTN1Q12860 1018 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 HSPB3Q12988 150 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 RRM2BQ7LG56 351 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 SMPDL3AQ92484 453 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 FOPNLQ96NB1 174 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 ZFP3Q96NJ6 502 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 SLC6A15Q9H2J7 730 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 TDP1Q9NUW8 608 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 P2RX2Q9UBL9 471 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 PRKAG2Q9UGJ0 569 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 FLVCR2Q9UPI3 526 aa10.02□□□□□ -0.81
USP54-204ENST00000422491 L7N2F9 121 aa10.01□□□□□ -0.81
USP54-204ENST00000422491 SOCS6O14544 535 aa10.01□□□□□ -0.81
USP54-204ENST00000422491 TSPAN6O43657 245 aa10.01□□□□□ -0.81
USP54-204ENST00000422491 NTN1O95631 604 aa10.01□□□□□ -0.81
USP54-204ENST00000422491 EOMESO95936 686 aa10.01□□□□□ -0.81
USP54-204ENST00000422491 RPLP2P05387 115 aaKnown RBP10.01□□□□□ -0.81
USP54-204ENST00000422491 GNSP15586 552 aa10.01□□□□□ -0.81
USP54-204ENST00000422491 ATP5A1P25705 553 aaKnown RBP10.01□□□□□ -0.81
USP54-204ENST00000422491 CALCRP30988 508 aa10.01□□□□□ -0.81
USP54-204ENST00000422491 CBX5P45973 191 aa10.01□□□□□ -0.81
USP54-204ENST00000422491 OMPP47874 163 aa10.01□□□□□ -0.81
USP54-204ENST00000422491 KIAA1024LP59773 190 aa10.01□□□□□ -0.81
USP54-204ENST00000422491 RPS7P62081 194 aaKnown RBP10.01□□□□□ -0.81
USP54-204ENST00000422491 ZNF169Q14929 603 aaPredicted RBP10.01□□□□□ -0.81
USP54-204ENST00000422491 SYTL3Q4VX76 610 aa10.01□□□□□ -0.81
USP54-204ENST00000422491 SFRP5Q5T4F7 317 aa10.01□□□□□ -0.81
USP54-204ENST00000422491 HMGN2P46Q86SG4 172 aa10.01□□□□□ -0.81
USP54-204ENST00000422491 LMNTD1Q8N9Z9 388 aa10.01□□□□□ -0.81
USP54-204ENST00000422491 ZNF740Q8NDX6 193 aa10.01□□□□□ -0.81
USP54-204ENST00000422491 OR5D16Q8NGK9 328 aa10.01□□□□□ -0.81
USP54-204ENST00000422491 C2orf15Q8WU43 125 aaKnown RBP10.01□□□□□ -0.81
USP54-204ENST00000422491 CNOT9Q92600 299 aaKnown RBP10.01□□□□□ -0.81
USP54-204ENST00000422491 SCAMP4Q969E2 229 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms