RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ACADMP11310 421 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 FGF9P31371 208 aaPredicted RBP19.63■□□□□ 0.73
CTCF-202ENST00000401394 SSR2P43308 183 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 C19orf57Q0VDD7 668 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 FGFBP1Q14512 234 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 C17orf47Q8NEP4 570 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 POF1BQ8WVV4 589 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 OMA1Q96E52 524 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 PRRC1Q96M27 445 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 ZNF558Q96NG5 402 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 DPCDQ9BVM2 203 aaPredicted RBP19.63■□□□□ 0.73
CTCF-202ENST00000401394 ZFP64Q9NPA5 681 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 SPHK2Q9NRA0 654 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 STMN3Q9NZ72 180 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 TEX46H3BTG2 121 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 BTN3A3O00478 584 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 C6P13671 934 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 OMPP47874 163 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 SF3A2Q15428 464 aaKnown RBP19.63■□□□□ 0.73
CTCF-202ENST00000401394 AADACL4Q5VUY2 407 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 RRM2BQ7LG56 351 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 ZNF431Q8TF32 576 aaPredicted RBP19.63■□□□□ 0.73
CTCF-202ENST00000401394 HMGB4Q8WW32 186 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 NXPE3Q969Y0 559 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 LRRC3BQ96PB8 259 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 BBS4Q96RK4 519 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 NCKAP1Q9Y2A7 1128 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 SPEF1Q9Y4P9 236 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 NDUFS4O43181 175 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 HRGP04196 525 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 MC3RP41968 323 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 POU6F2P78424 691 aaPredicted RBP19.62■□□□□ 0.73
CTCF-202ENST00000401394 RNLSQ5VYX0 342 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 IKBIPQ70UQ0 350 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 KRT78Q8N1N4 520 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 RFLNBQ8N5W9 214 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 OR52A5Q9H2C5 316 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 NEUROD4Q9HD90 331 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 ATP13A2Q9NQ11 1180 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 SAGE1Q9NXZ1 904 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 CBLCQ9ULV8 474 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 IGKV1-8A0A0C4DH67 115 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 SURF4O15260 269 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 KELP23276 732 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 CCNJQ5T5M9 372 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 OR9A2Q8NGT5 310 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 SMG7Q92540 1137 aaKnown RBP19.62■□□□□ 0.73
CTCF-202ENST00000401394 PIGKQ92643 395 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 COL26A1Q96A83 441 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 ARRDC3Q96B67 414 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 NIPAL2Q9H841 368 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 PLXNA2O75051 1894 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 QSOX1O00391 747 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 SLC43A1O75387 559 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 PAPLNO95428 1278 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 CFDP00746 253 aaPredicted RBP19.62■□□□□ 0.73
CTCF-202ENST00000401394 GIFP27352 417 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 SLC6A1P30531 599 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 COX10Q12887 443 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 ZNF322Q6U7Q0 402 aaPredicted RBP19.62■□□□□ 0.73
CTCF-202ENST00000401394 SUN3Q8TAQ9 357 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 VWCEQ96DN2 955 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 GTPBP2Q9BX10 602 aaKnown RBP19.62■□□□□ 0.73
CTCF-202ENST00000401394 MED28Q9H204 178 aa19.62■□□□□ 0.73
CTCF-202ENST00000401394 A0A1W2PR48 441 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 HLA-DPB1P04440 258 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 ANKRD34CP0C6C1 535 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 LYPD4Q6UWN0 246 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 PRR23CQ6ZRP0 262 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 CYB561A3Q8NBI2 242 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 FBXO15Q8NCQ5 510 aaPredicted RBP19.61■□□□□ 0.73
CTCF-202ENST00000401394 WDR89Q96FK6 387 aaPredicted RBP19.61■□□□□ 0.73
CTCF-202ENST00000401394 FAM83CQ9BQN1 747 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP19.61■□□□□ 0.73
CTCF-202ENST00000401394 SLC35C2Q9NQQ7 365 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 NLGN3Q9NZ94 848 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 CHD9Q3L8U1 2897 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 NPIPA5A0A0B4J1W7 369 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 KDM4EB2RXH2 506 aaPredicted RBP19.61■□□□□ 0.73
CTCF-202ENST00000401394 NPIPA7E9PJI5 369 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 PROM1O43490 865 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 NPIPA8P0DM63 369 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 PRG2P13727 222 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 PPP2R1BP30154 601 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 NTRK2Q16620 822 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 PLA1AQ53H76 456 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 C6orf132Q5T0Z8 1188 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 DNAJA4Q8WW22 397 aaPredicted RBP19.61■□□□□ 0.73
CTCF-202ENST00000401394 NUS1Q96E22 293 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 ZC3HAV1LQ96H79 300 aaKnown RBP19.61■□□□□ 0.73
CTCF-202ENST00000401394 SLC38A2Q96QD8 506 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 PLEKHM1Q9Y4G2 1056 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 LRRK1Q38SD2 2015 aa19.61■□□□□ 0.73
CTCF-202ENST00000401394 I3L521 148 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 GKN3PP0CG01 181 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 VSX2P58304 361 aaPredicted RBP19.6■□□□□ 0.73
CTCF-202ENST00000401394 ADAM15Q13444 863 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 C9orf64Q5T6V5 341 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 LIX1LQ8IVB5 337 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 OR4N5Q8IXE1 308 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms