RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 NFKBIDQ8NI38 313 aa12.29□□□□□ -0.44
SQSTM1-201ENST00000360718 ADAMTS18Q8TE60 1221 aa12.29□□□□□ -0.44
SQSTM1-201ENST00000360718 ATOH1Q92858 354 aaPredicted RBP12.29□□□□□ -0.44
SQSTM1-201ENST00000360718 SLC35B4Q969S0 331 aa12.29□□□□□ -0.44
SQSTM1-201ENST00000360718 NEURL3Q96EH8 262 aa12.29□□□□□ -0.44
SQSTM1-201ENST00000360718 C6orf62Q9GZU0 229 aaPredicted RBP12.29□□□□□ -0.44
SQSTM1-201ENST00000360718 PCDHGB2Q9Y5G2 931 aa12.29□□□□□ -0.44
SQSTM1-201ENST00000360718 PEX16Q9Y5Y5 336 aa12.29□□□□□ -0.44
SQSTM1-201ENST00000360718 CFAP54Q96N23 3096 aa12.29□□□□□ -0.44
SQSTM1-201ENST00000360718 FER1L5A0AVI2 2057 aa12.29□□□□□ -0.44
SQSTM1-201ENST00000360718 CHST10O43529 356 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 CCNB2O95067 398 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 STSP08842 583 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 DBTP11182 482 aaKnown RBP12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 SOX6P35712 828 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 HMGA2P52926 109 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 PRKCDQ05655 676 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 ST3GAL4Q11206 333 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 TCF15Q12870 199 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 TP53BP2Q13625 1128 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 CEBPEQ15744 281 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 MAPK11Q15759 364 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 CLPPQ16740 277 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 ARMCX4Q5H9R4 360 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 COX20Q5RI15 118 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 ZNF367Q7RTV3 350 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 HPS1Q92902 700 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 RNF31Q96EP0 1072 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 NDC1Q9BTX1 674 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 NXF2Q9GZY0 626 aaKnown RBP12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 C3orf14Q9HBI5 128 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 AMBNQ9NP70 447 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 ABCB10Q9NRK6 738 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 SIRT3Q9NTG7 399 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 ZNF226Q9NYT6 803 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 ZNF451Q9Y4E5 1061 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 TMEM184BQ9Y519 407 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 COL5A1P20908 1838 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 WDFY3Q8IZQ1 3526 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 NINQ8N4C6 2090 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 BLACEA4D250 179 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 FAM227AF5H4B4 570 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 GADD45GO95257 159 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 ANKRD34CP0C6C1 535 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 GABRB1P18505 474 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 PPP2R1BP30154 601 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 OR1E2P47887 323 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 ANXA11P50995 505 aaKnown RBP12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 PRR5P85299 388 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 SAXO2Q658L1 398 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 TMEM64Q6YI46 380 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 C6orf120Q7Z4R8 191 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 LYSMD2Q8IV50 215 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 CCDC103Q8IW40 242 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 SLC44A2Q8IWA5 706 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 OR1L3Q8NH93 324 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 SFXN5Q8TD22 340 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 COL26A1Q96A83 441 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 MMABQ96EY8 250 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 ZNF681Q96N22 645 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 TMEM165Q9HC07 324 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 CUTCQ9NTM9 273 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 ZCCHC3Q9NUD5 404 aaKnown RBP12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 RLIMQ9NVW2 624 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 GPATCH2Q9NW75 528 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 CLN6Q9NWW5 311 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 GPR83Q9NYM4 423 aa12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 CNOT2Q9NZN8 540 aaKnown RBP12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 GPC6Q9Y625 555 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-201ENST00000360718 IGHV5-10-1A0A0J9YXX1 117 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 ARRDC5A6NEK1 342 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 H0YIG0 161 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 CYR61O00622 381 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 FLRT2O43155 660 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 ADORA3P0DMS8 318 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 RHCEP18577 417 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 TGFBR1P36897 503 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 XCR1P46094 333 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 RGS6P49758 472 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 CASP9P55211 416 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 ACY1Q03154 408 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 COLEC12Q5KU26 742 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 METTL27Q8N6F8 245 aaPredicted RBP12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 PRSS33Q8NF86 280 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 OR56A1Q8NGH5 318 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 SUN3Q8TAQ9 357 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 MVB12AQ96EY5 273 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 GFM1Q96RP9 751 aaKnown RBP12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 NIPSNAP1Q9BPW8 284 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 ENAMQ9NRM1 1142 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 FGF21Q9NSA1 209 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 HCN3Q9P1Z3 774 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 NDOR1Q9UHB4 597 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 PCDHGA3Q9Y5H0 932 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 ENPP4Q9Y6X5 453 aa12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 EP300Q09472 2414 aaPredicted RBP12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 COL27A1Q8IZC6 1860 aaPredicted RBP12.27□□□□□ -0.44
SQSTM1-201ENST00000360718 LOC100506127A0A0U1RQW1 187 aa12.27□□□□□ -0.45
SQSTM1-201ENST00000360718 CLDN4O14493 209 aa12.27□□□□□ -0.45
SQSTM1-201ENST00000360718 HYAL3O43820 417 aaPredicted RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms