RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SLC22A10Q63ZE4 541 aa18.1■□□□□ 0.49
UPF1-201ENST00000262803 ZNF551Q7Z340 670 aaPredicted RBP18.1■□□□□ 0.49
UPF1-201ENST00000262803 TMEM151AQ8N4L1 468 aa18.1■□□□□ 0.49
UPF1-201ENST00000262803 TMIGD2Q96BF3 282 aa18.1■□□□□ 0.49
UPF1-201ENST00000262803 MYADMQ96S97 322 aa18.1■□□□□ 0.49
UPF1-201ENST00000262803 CLSTN3Q9BQT9 956 aa18.1■□□□□ 0.49
UPF1-201ENST00000262803 CENPOQ9BU64 300 aa18.1■□□□□ 0.49
UPF1-201ENST00000262803 PBDC1Q9BVG4 233 aa18.1■□□□□ 0.49
UPF1-201ENST00000262803 NGBQ9NPG2 151 aa18.1■□□□□ 0.49
UPF1-201ENST00000262803 PARPBPQ9NWS1 579 aa18.1■□□□□ 0.49
UPF1-201ENST00000262803 BMP4P12644 408 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 GPX3P22352 226 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 ATAD3CQ5T2N8 411 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 PXKQ7Z7A4 578 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 A0A1W2PPK0 400 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 BOLA2-SMG1P6H3BVE0 249 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 CNMDO75829 334 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 VIPR2P41587 438 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 PITPNBP48739 271 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 RGS19P49795 217 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 ZNF81P51508 661 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 INHBCP55103 352 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 MRPS10P82664 201 aaKnown RBP18.09■□□□□ 0.49
UPF1-201ENST00000262803 ZXDBP98169 803 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 TLE3Q04726 772 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 RAB41Q5JT25 222 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 TMEM25Q86YD3 366 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 KLBQ86Z14 1044 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 TCEAL4Q96EI5 215 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 CARD8Q9Y2G2 431 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 A6NHS1 94 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 PCDH17O14917 1159 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 SEC14L5O43304 696 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 RPS17P08708 135 aaKnown RBP18.09■□□□□ 0.49
UPF1-201ENST00000262803 PTGS2P35354 604 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 POU3F4P49335 361 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 CNN3Q15417 329 aaKnown RBP18.09■□□□□ 0.49
UPF1-201ENST00000262803 CHST14Q8NCH0 376 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 NAXEQ8NCW5 288 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 ALOXE3Q9BYJ1 711 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 TOPAZ1Q8N9V7 1692 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 TRIM64BA6NI03 449 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 ERVK-16P61578 105 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 C5orf46Q6UWT4 87 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 USP53Q70EK8 1073 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 ERVK13-1Q9NX77 482 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 RGPD2P0DJD1 1756 aa18.09■□□□□ 0.49
UPF1-201ENST00000262803 GLSO94925 669 aaPredicted RBP18.08■□□□□ 0.49
UPF1-201ENST00000262803 H2AFB2P0C5Z0 115 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 TNFRSF1BP20333 461 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 PCGF2P35227 344 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 SLC26A5P58743 744 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 CTXN1P60606 82 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 NNATQ16517 81 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 GSG1LQ6UXU4 331 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 ANKRD13BQ86YJ7 626 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 OR4K5Q8NGD3 323 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 OR5AK2Q8NH90 309 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 RADILQ96JH8 1075 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 KLF16Q9BXK1 252 aaPredicted RBP18.08■□□□□ 0.49
UPF1-201ENST00000262803 FOLH1BQ9HBA9 442 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 RFPL2O75678 378 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 YPEL5P62699 121 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 EEF1A1P5Q5VTE0 462 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 PIANPQ8IYJ0 282 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 OR52E2Q8NGJ4 325 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 OR13J1Q8NGT2 312 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 OR5H2Q8NGV7 314 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 GATA6Q92908 595 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 NXPE3Q969Y0 559 aa18.08■□□□□ 0.49
UPF1-201ENST00000262803 A0A0U1RQS6 177 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 SFTPBP07988 381 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 CNR2P34972 360 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 OPN5Q6U736 354 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 TRIM46Q7Z4K8 759 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 ZFP41Q8N8Y5 198 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 OR5J2Q8NH18 312 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 SLC30A3Q99726 388 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 NAP1L6A6NFF2 107 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 CD8B2A6NJW9 211 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 NOTOA8MTQ0 251 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 D6RAR5 112 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 CD8BP10966 210 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 CHMP24386 653 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 PRDX3P30048 256 aaKnown RBP18.08■□□□□ 0.48
UPF1-201ENST00000262803 HOXA9P31269 272 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 NAGSQ8N159 534 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 WDSUB1Q8N9V3 476 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 THAP3Q8WTV1 239 aaPredicted RBP18.08■□□□□ 0.48
UPF1-201ENST00000262803 FOXRED1Q96CU9 486 aaPredicted RBP18.08■□□□□ 0.48
UPF1-201ENST00000262803 TREX1Q9NSU2 369 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 ACVR1BP36896 505 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 GPR4P46093 362 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 PPA1Q15181 289 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 RGNQ15493 299 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 FIGNL1Q6PIW4 674 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 ZNF417Q8TAU3 575 aa18.08■□□□□ 0.48
UPF1-201ENST00000262803 TRIM43Q96BQ3 446 aaPredicted RBP18.08■□□□□ 0.48
UPF1-201ENST00000262803 ANKRD30BLA7E2S9 258 aa18.07■□□□□ 0.48
UPF1-201ENST00000262803 CREBL2O60519 120 aaPredicted RBP18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms