RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 NT5DC2Q9H857 520 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 LIN7BQ9HAP6 207 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 CUEDC1Q9NWM3 386 aaPredicted RBP13.48□□□□□ -0.25
SDC1-201ENST00000254351 A0A087WUU8 490 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 SLC22A23A1A5C7 686 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 L7N2F9 121 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 ZNF593O00488 134 aaPredicted RBP13.48□□□□□ -0.25
SDC1-201ENST00000254351 ERAL1O75616 437 aaKnown RBP13.48□□□□□ -0.25
SDC1-201ENST00000254351 E2F1Q01094 437 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 CAP1Q01518 475 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 SLC36A2Q495M3 483 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 TRPV1Q8NER1 839 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 OR2T4Q8NH00 348 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 PXYLP1Q8TE99 480 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 SLC5A11Q8WWX8 675 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 SLC38A2Q96QD8 506 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 CA10Q9NS85 328 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 TNFRSF10DQ9UBN6 386 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 TMEM129A0AVI4 362 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 MMP20O60882 483 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 GYPBP06028 91 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 RB1P06400 928 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 FGF9P31371 208 aaPredicted RBP13.47□□□□□ -0.25
SDC1-201ENST00000254351 HCCSP53701 268 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 TAP2Q03519 686 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 EOGTQ5NDL2 527 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 SFXN4Q6P4A7 337 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 C3P1Q6ZMU1 363 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 SLCO4C1Q6ZQN7 724 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 TPRG1Q6ZUI0 275 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 Q6ZVU0 165 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 ADGRG3Q86Y34 549 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 RELL2Q8NC24 303 aaPredicted RBP13.47□□□□□ -0.25
SDC1-201ENST00000254351 ZNF707Q96C28 371 aaPredicted RBP13.47□□□□□ -0.25
SDC1-201ENST00000254351 ZNF436Q9C0F3 470 aaPredicted RBP13.47□□□□□ -0.25
SDC1-201ENST00000254351 IFT46Q9NQC8 304 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 MGAT4CQ9UBM8 478 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 PLXND1Q9Y4D7 1925 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 ARID1AO14497 2285 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 CASP8AP2Q9UKL3 1982 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 J3QLW9 94 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 SLC19A2O60779 497 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 KLHL18O94889 574 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 CATP04040 527 aaKnown RBP13.47□□□□□ -0.25
SDC1-201ENST00000254351 ZNF19P17023 458 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 TPMTP51580 245 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 TMEM255AQ5JRV8 349 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 CLVS2Q5SYC1 327 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 LINGO2Q7L985 606 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 TRMT11Q7Z4G4 463 aaKnown RBP13.47□□□□□ -0.25
SDC1-201ENST00000254351 HSD11B1LQ7Z5J1 315 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 SLAIN1Q8ND83 568 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 ADAMTS19Q8TE59 1207 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 APOBEC4Q8WW27 367 aaKnown RBP13.47□□□□□ -0.25
SDC1-201ENST00000254351 ECHDC3Q96DC8 303 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 PDXPQ96GD0 296 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 FUZQ9BT04 418 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 TRMT61BQ9BVS5 477 aaKnown RBP13.47□□□□□ -0.25
SDC1-201ENST00000254351 DMRT3Q9NQL9 472 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 MAN2C1Q9NTJ4 1040 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 RCE1Q9Y256 329 aa13.47□□□□□ -0.25
SDC1-201ENST00000254351 A8MVJ9 347 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 IGSF6O95976 241 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 CXCL2P19875 107 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 UQCRC2P22695 453 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 CFL1P23528 166 aaKnown RBP13.46□□□□□ -0.25
SDC1-201ENST00000254351 KCNJ5P48544 419 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 BTG1P62324 171 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 GPR17Q13304 367 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 DSG2Q14126 1118 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 LASP1Q14847 261 aaKnown RBP13.46□□□□□ -0.25
SDC1-201ENST00000254351 METTL2BQ6P1Q9 378 aaKnown RBP13.46□□□□□ -0.25
SDC1-201ENST00000254351 TMEM99Q8N816 258 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 OR52B4Q8NGK2 314 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 CYSLTR2Q9NS75 346 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 Q9Y3F1 56 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 ALPK2Q86TB3 2170 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 FXYD6-FXYD2A0A087WZ82 144 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 KHNYNO15037 678 aaKnown RBP13.46□□□□□ -0.25
SDC1-201ENST00000254351 ARPC1BO15143 372 aaKnown RBP13.46□□□□□ -0.25
SDC1-201ENST00000254351 PGRMC2O15173 223 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 INPPL1O15357 1258 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 CHST10O43529 356 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 RNF13O43567 381 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 ATG13O75143 517 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 SOX30O94993 753 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 SPDEFO95238 335 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 ADRB1P08588 477 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 PAICSP22234 425 aaKnown RBP13.46□□□□□ -0.25
SDC1-201ENST00000254351 ATP5A1P25705 553 aaKnown RBP13.46□□□□□ -0.25
SDC1-201ENST00000254351 CLDN12P56749 244 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 CLDN2P57739 230 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 RIN1Q13671 783 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 ZNF273Q14593 569 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 CD276Q5ZPR3 534 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 OR5M10Q6IEU7 315 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 FAM71E1Q6IPT2 247 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 LRRC28Q86X40 367 aaPredicted RBP13.46□□□□□ -0.25
SDC1-201ENST00000254351 C17orf47Q8NEP4 570 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 OR4Q3Q8NH05 313 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms