RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 GALNSP34059 522 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 BCAP31P51572 246 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 LIM2P55344 173 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 SLC26A5P58743 744 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 PCBD1P61457 104 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 ZXDAP98168 799 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 NPRL3Q12980 569 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 DEFB110Q30KQ9 67 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 GDPGP1Q6ZNW5 385 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 VRK3Q8IV63 474 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 NAGSQ8N159 534 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 MS4A15Q8N5U1 240 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 YIPF7Q8N8F6 280 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 ZFP90Q8TF47 636 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 WDR83Q9BRX9 315 aaKnown RBP12.81□□□□□ -0.36
LDLR-201ENST00000252444 CXorf21Q9HAI6 301 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 RAB9BQ9NP90 201 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 DAPK2Q9UIK4 370 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 A0A087WZY1 265 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 MYF6P23409 242 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 KCTD19Q17RG1 926 aaPredicted RBP12.81□□□□□ -0.36
LDLR-201ENST00000252444 ZNF227Q86WZ6 799 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 SLC30A3Q99726 388 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 PARPBPQ9NWS1 579 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 USP36Q9P275 1121 aaKnown RBP12.81□□□□□ -0.36
LDLR-201ENST00000252444 ABCD2Q9UBJ2 740 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 FMO6PO60774 539 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 SLC19A2O60779 497 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 PER3P56645 1201 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 C21orf58P58505 322 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.81□□□□□ -0.36
LDLR-201ENST00000252444 HS3ST5Q8IZT8 346 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 AMDHD1Q96NU7 426 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 DAPP1Q9UN19 280 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 PRKYO43930 277 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 KHDRBS3O75525 346 aaKnown RBP12.8□□□□□ -0.36
LDLR-201ENST00000252444 GPX2P18283 190 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 SLC19A1P41440 591 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 KIR2DL1P43626 348 aaPredicted RBP12.8□□□□□ -0.36
LDLR-201ENST00000252444 PXNP49023 591 aaPredicted RBP12.8□□□□□ -0.36
LDLR-201ENST00000252444 QPRTQ15274 297 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 KIAA1211LQ6NV74 962 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 PAQR7Q86WK9 346 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 OR9A4Q8NGU2 314 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 RBCK1Q9BYM8 510 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 OR10A5Q9H207 317 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 TAS2R10Q9NYW0 307 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 RIMS3Q9UJD0 308 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 PTGDR2Q9Y5Y4 395 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 SCN1AP35498 2009 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 KLRC4-KLRK1H3BQV0 150 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 MT-ATP6P00846 226 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 S1PR1P21453 382 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 EDNRAP25101 427 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 ARG2P78540 354 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 MALLQ13021 153 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 SMARCD3Q6STE5 483 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 OR14L1PQ8NHC6 308 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 CREB3L4Q8TEY5 395 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 MAP3K3Q99759 626 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 FOXQ1Q9C009 403 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 CNOT2Q9NZN8 540 aaKnown RBP12.8□□□□□ -0.36
LDLR-201ENST00000252444 EIF3KQ9UBQ5 218 aaKnown RBP12.8□□□□□ -0.36
LDLR-201ENST00000252444 GLS2Q9UI32 602 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 MGAMO43451 1857 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 RLFQ13129 1914 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 SIGLEC6O43699 453 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 NADKO95544 446 aaPredicted RBP12.8□□□□□ -0.36
LDLR-201ENST00000252444 EPHA8P29322 1005 aaPredicted RBP12.8□□□□□ -0.36
LDLR-201ENST00000252444 SLC18B1Q6NT16 456 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 RFLNAQ6ZTI6 216 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 TMEM239Q8WW34 195 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 ZNF597Q96LX8 424 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 S1PR5Q9H228 398 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 ZNF696Q9H7X3 374 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 SMCHD1A6NHR9 2005 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 THSD7BQ9C0I4 1608 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 METTL21EPA6NDL7 271 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 DBTP11182 482 aaKnown RBP12.8□□□□□ -0.36
LDLR-201ENST00000252444 GADD45AP24522 165 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 TMEM31Q5JXX7 168 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 SAXO2Q658L1 398 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 ZNF100Q8IYN0 542 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 ANKK1Q8NFD2 765 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 INPP5KQ9BT40 448 aa12.8□□□□□ -0.36
LDLR-201ENST00000252444 ZNF264O43296 627 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 PEPDP12955 493 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 GSTT1P30711 240 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 SLC35A1P78382 337 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 PYDC2Q56P42 97 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 PAGE3Q5JUK9 113 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 SLC6A19Q695T7 634 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 PRSS42Q7Z5A4 293 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 SLCO6A1Q86UG4 719 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 ASB17Q8WXJ9 295 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 ERMAPQ96PL5 475 aaPredicted RBP12.79□□□□□ -0.36
LDLR-201ENST00000252444 LRRC61Q9BV99 259 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 RXFP3Q9NSD7 469 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 CA5BQ9Y2D0 317 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 DCNP07585 359 aaKnown RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms