RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 C11orf54Q9H0W9 315 aaPredicted RBP11.95□□□□□ -0.5
LINC00540-203ENST00000631321 SYNDIG1Q9H7V2 258 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 TRIM45Q9H8W5 580 aaPredicted RBP11.95□□□□□ -0.5
LINC00540-203ENST00000631321 GDE1Q9NZC3 331 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 ZNF780BQ9Y6R6 833 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 LAMA3Q16787 3333 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 CKAP5Q14008 2032 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 A0A1W2PP55 124 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 DUXAA6NLW8 204 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 LRRTM2O43300 516 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 NTN1O95631 604 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 ASGR2P07307 311 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 S100A1P23297 94 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 HTR1FP30939 366 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 RAB8AP61006 207 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 MLLT1Q03111 559 aaPredicted RBP11.94□□□□□ -0.5
LINC00540-203ENST00000631321 TAB1Q15750 504 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 FAM214AQ32MH5 1076 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 CLEC12AQ5QGZ9 265 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 PDZK1Q5T2W1 519 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 ZNF620Q6ZNG0 422 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 RRM2BQ7LG56 351 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 C16orf62Q7Z3J2 963 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 GDF7Q7Z4P5 450 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 NKAIN4Q8IVV8 208 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 VWA5B2Q8N398 1253 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 TMEM145Q8NBT3 493 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 OR52N1Q8NH53 320 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 TEX12Q9BXU0 123 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 EQTNQ9NQ60 294 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 FAM172BPA6NC97 362 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 RNGTTO60942 597 aaKnown RBP11.94□□□□□ -0.5
LINC00540-203ENST00000631321 TMCC2O75069 709 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 LALBAP00709 142 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 CHRM5P08912 532 aaPredicted RBP11.94□□□□□ -0.5
LINC00540-203ENST00000631321 PTBP1P26599 531 aaKnown RBP eCLIP11.94□□□□□ -0.56e-10■■■■■ 40.6
LINC00540-203ENST00000631321 PDX1P52945 283 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 RPS21P63220 83 aaKnown RBP11.94□□□□□ -0.5
LINC00540-203ENST00000631321 LTB4RQ15722 352 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 TANGO2Q6ICL3 276 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 MFSD12Q6NUT3 480 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 METAP1DQ6UB28 335 aaPredicted RBP11.94□□□□□ -0.5
LINC00540-203ENST00000631321 VITQ6UXI7 678 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 FRRS1Q6ZNA5 592 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 PLEKHM3Q6ZWE6 761 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 SHFQ7M4L6 423 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 ADGRD2Q7Z7M1 963 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 PAQR7Q86WK9 346 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 BADQ92934 168 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 GAL3ST3Q96A11 431 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 SLC41A3Q96GZ6 507 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 PPP1R3EQ9H7J1 279 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 ASB6Q9NWX5 421 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 TOR4AQ9NXH8 423 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 ZNF443Q9Y2A4 671 aaPredicted RBP11.94□□□□□ -0.5
LINC00540-203ENST00000631321 HEBP2Q9Y5Z4 205 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 CDH10Q9Y6N8 788 aa11.94□□□□□ -0.5
LINC00540-203ENST00000631321 CHD7Q9P2D1 2997 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 FAM47E-STBD1D6RA91 191 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 PLA2G10O15496 165 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 IDH3BO43837 385 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 FCMRO60667 390 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 AGR2O95994 175 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 HMGN1P05114 100 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 GALP22466 123 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 SOX18P35713 384 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 IGFALSP35858 605 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 WASP42768 502 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 AVPR1BP47901 424 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 RGS8P57771 180 aaPredicted RBP11.93□□□□□ -0.5
LINC00540-203ENST00000631321 SLC30A6Q6NXT4 461 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 CDC73Q6P1J9 531 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 VN1R4Q7Z5H5 301 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 PEX5LQ8IYB4 626 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 SLC7A5P1Q8MH63 180 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 PSD4Q8NDX1 1056 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 ADAMTS15Q8TE58 950 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 HERVK_113Q902F9 699 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 KAT2AQ92830 837 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 FAM131CQ96AQ9 280 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 MS4A4EQ96PG1 132 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 DEPDC7Q96QD5 511 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 MCHR1Q99705 422 aa11.93□□□□□ -0.5
LINC00540-203ENST00000631321 MTHFD2LQ9H903 347 aaPredicted RBP11.93□□□□□ -0.5
LINC00540-203ENST00000631321 TBC1D3KA0A087X1G2 549 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 TBC1D3FA6NER0 549 aaPredicted RBP11.92□□□□□ -0.5
LINC00540-203ENST00000631321 CCDC182A6NF36 153 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 B4DXG7 233 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 J3QRE1 110 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 CHST10O43529 356 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 AKAP8O43823 692 aaKnown RBP11.92□□□□□ -0.5
LINC00540-203ENST00000631321 HCN1O60741 890 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 HLA-DPB1P04440 258 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 BTN3A2P78410 334 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 SGCGQ13326 291 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 RIN1Q13671 783 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.92□□□□□ -0.5
LINC00540-203ENST00000631321 PUS10Q3MIT2 529 aaKnown RBP11.92□□□□□ -0.5
LINC00540-203ENST00000631321 PYDC2Q56P42 97 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 TBC1D3GQ6DHY5 549 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms