RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TNFSF14O43557 240 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 PRKNO60260 465 aaPredicted RBP9.92□□□□□ -0.82
CUX1-221ENST00000622516 OXSR1O95747 527 aaPredicted RBP9.92□□□□□ -0.82
CUX1-221ENST00000622516 ACP2P11117 423 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 RABIFP47224 123 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 ANXA11P50995 505 aaKnown RBP9.92□□□□□ -0.82
CUX1-221ENST00000622516 INAQ16352 499 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 ABHD13Q7L211 337 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 RRM2BQ7LG56 351 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 ABI3BPQ7Z7G0 1075 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 GALNT12Q8IXK2 581 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 METTL27Q8N6F8 245 aaPredicted RBP9.92□□□□□ -0.82
CUX1-221ENST00000622516 OR8D4Q8NGM9 314 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 BAHD1Q8TBE0 780 aaPredicted RBP9.92□□□□□ -0.82
CUX1-221ENST00000622516 GPBAR1Q8TDU6 330 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 TMEM255BQ8WV15 326 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 TRUB1Q8WWH5 349 aaKnown RBP9.92□□□□□ -0.82
CUX1-221ENST00000622516 TRNT1Q96Q11 434 aaKnown RBP9.92□□□□□ -0.82
CUX1-221ENST00000622516 POLE4Q9NR33 117 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 ENOPH1Q9UHY7 261 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 CA14Q9ULX7 337 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 PORP16435 677 aaPredicted RBP9.92□□□□□ -0.82
CUX1-221ENST00000622516 SMIM11AP58511 58 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 ZNF91Q05481 1191 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 GNA13Q14344 377 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 GAS6Q14393 721 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 TYW3Q6IPR3 259 aaKnown RBP9.92□□□□□ -0.82
CUX1-221ENST00000622516 NCCRP1Q6ZVX7 275 aaPredicted RBP9.92□□□□□ -0.82
CUX1-221ENST00000622516 TDHQ8IZJ6 230 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 CENPSQ8N2Z9 138 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 ANKK1Q8NFD2 765 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 MCFD2Q8NI22 146 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 MS4A4EQ96PG1 132 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 MCHR1Q99705 422 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 EXOSC4Q9NPD3 245 aaKnown RBP9.92□□□□□ -0.82
CUX1-221ENST00000622516 EFCAB10A6NFE3 127 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 KPNA4O00629 521 aaPredicted RBP9.91□□□□□ -0.82
CUX1-221ENST00000622516 ARHGAP33O14559 1287 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 UBE2IP63279 158 aaKnown RBP9.91□□□□□ -0.82
CUX1-221ENST00000622516 MAT1AQ00266 395 aaKnown RBP9.91□□□□□ -0.82
CUX1-221ENST00000622516 IRF3Q14653 427 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 C12orf73Q69YU5 71 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 SLC30A6Q6NXT4 461 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 C1orf94Q6P1W5 598 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 B3GLCTQ6Y288 498 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 PLEKHM3Q6ZWE6 761 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 NRMQ8IXM6 262 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 ZNF614Q8N883 585 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 GPR151Q8TDV0 419 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 ZDHHC1Q8WTX9 485 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 FCGR1BQ92637 280 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 OTULINQ96BN8 352 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 MOAP1Q96BY2 351 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 GSDMCQ9BYG8 508 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 SLC25A19Q9HC21 320 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 USP36Q9P275 1121 aaKnown RBP9.91□□□□□ -0.82
CUX1-221ENST00000622516 PHF11Q9UIL8 331 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 HS3ST3A1Q9Y663 406 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 A0A0A6YYC8 382 aaPredicted RBP9.91□□□□□ -0.82
CUX1-221ENST00000622516 SLC9B1P1A6NJY1 282 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 I3L1I5 382 aaPredicted RBP9.91□□□□□ -0.82
CUX1-221ENST00000622516 HRKO00198 91 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 CASC3O15234 703 aaKnown RBP9.91□□□□□ -0.82
CUX1-221ENST00000622516 HYAL3O43820 417 aaPredicted RBP9.91□□□□□ -0.82
CUX1-221ENST00000622516 MRPS14O60783 128 aaKnown RBP9.91□□□□□ -0.82
CUX1-221ENST00000622516 RPLP0P05388 317 aaKnown RBP9.91□□□□□ -0.82
CUX1-221ENST00000622516 SERPINB10P48595 397 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 PCYT1AP49585 367 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 SSX1Q16384 188 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 KIAA0895LQ68EN5 471 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 CDC73Q6P1J9 531 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 ZNF836Q6ZNA1 936 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 Q6ZNX1 250 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 DCDC5Q6ZRR9 648 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 OR2L13Q8N349 312 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 OR8J1Q8NGP2 316 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 TMEM203Q969S6 136 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 SDF2Q99470 211 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 SAP130Q9H0E3 1048 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 AKIP1Q9NQ31 210 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 HCN3Q9P1Z3 774 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 KLHL3Q9UH77 587 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 KCNE5Q9UJ90 142 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 OSGIN1Q9UJX0 560 aa9.91□□□□□ -0.82
CUX1-221ENST00000622516 GXYLT2A0PJZ3 443 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 SH3D21A4FU49 640 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 URADA6NGE7 173 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 AGRPO00253 132 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 CYR61O00622 381 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 DSCR3O14972 297 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 MPZL2O60487 215 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 SDC3O75056 442 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 MED26O95402 600 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 GNSP15586 552 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 CDH3P22223 829 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 SLC15A1P46059 708 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 DNASE1L3Q13609 305 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 NNATQ16517 81 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 SYT14P1Q58G82 188 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 ZNF628Q5EBL2 1059 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 124.5 ms