RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 SPSB2Q99619 263 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 TMEM43Q9BTV4 400 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 ARHGAP39Q9C0H5 1083 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 SLC25A51Q9H1U9 297 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 GSTO2Q9H4Y5 243 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 TM7SF3Q9NS93 570 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 SYT5O00445 386 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 PLSCR1O15162 318 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 MATN3O15232 486 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 PRKYO43930 277 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 TFPIP10646 304 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 SHC1P29353 583 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 RPL9P32969 192 aaKnown RBP4.78□□□□□ -1.64
VPS13D-214ENST00000620676 ARL2P36404 184 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 PTGES3Q15185 160 aaKnown RBP4.78□□□□□ -1.64
VPS13D-214ENST00000620676 RAB11BQ15907 218 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 DPYSL2Q16555 572 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 TUSC1Q2TAM9 212 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 LETMD1Q6P1Q0 360 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 KLHDC8BQ8IXV7 354 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 OR2T11Q8NH01 316 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 THAP3Q8WTV1 239 aaPredicted RBP4.78□□□□□ -1.64
VPS13D-214ENST00000620676 CHAC2Q8WUX2 184 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 C20orf85Q9H1P6 137 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 NME2P1O60361 137 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 AHCYP23526 432 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 DCST2Q5T1A1 773 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 METTL27Q8N6F8 245 aaPredicted RBP4.78□□□□□ -1.64
VPS13D-214ENST00000620676 SCML1Q9UN30 329 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 UBIAD1Q9Y5Z9 338 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 DCDC2BA2VCK2 349 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 TGOLN2O43493 480 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 GABRB1P18505 474 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 SKP2Q13309 424 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 ZFPM2Q8WW38 1151 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 KIAA1191Q96A73 305 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 PITX2Q99697 317 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 TCEAL7Q9BRU2 100 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 PDZD7Q9H5P4 517 aa4.78□□□□□ -1.64
VPS13D-214ENST00000620676 ABT1Q9ULW3 272 aaKnown RBP4.78□□□□□ -1.64
VPS13D-214ENST00000620676 ZNF878C9JN71 531 aa4.78□□□□□ -1.65
VPS13D-214ENST00000620676 E7ESA3 106 aa4.78□□□□□ -1.65
VPS13D-214ENST00000620676 CYB5AP00167 134 aa4.78□□□□□ -1.65
VPS13D-214ENST00000620676 FGBP02675 491 aa4.78□□□□□ -1.65
VPS13D-214ENST00000620676 CSF2RBP32927 897 aa4.78□□□□□ -1.65
VPS13D-214ENST00000620676 PIP5KL1Q5T9C9 394 aa4.78□□□□□ -1.65
VPS13D-214ENST00000620676 OR2T2Q6IF00 324 aa4.78□□□□□ -1.65
VPS13D-214ENST00000620676 LCN10Q6JVE6 187 aa4.78□□□□□ -1.65
VPS13D-214ENST00000620676 ZNF600Q6ZNG1 722 aa4.78□□□□□ -1.65
VPS13D-214ENST00000620676 PARGQ86W56 976 aa4.78□□□□□ -1.65
VPS13D-214ENST00000620676 AMIGO3Q86WK7 504 aa4.78□□□□□ -1.65
VPS13D-214ENST00000620676 ZNF101Q8IZC7 436 aa4.78□□□□□ -1.65
VPS13D-214ENST00000620676 ZMYND19Q96E35 227 aaPredicted RBP4.78□□□□□ -1.65
VPS13D-214ENST00000620676 AKR1E2Q96JD6 320 aa4.78□□□□□ -1.65
VPS13D-214ENST00000620676 PITHD1Q9GZP4 211 aaPredicted RBP4.78□□□□□ -1.65
VPS13D-214ENST00000620676 C5AR2Q9P296 337 aa4.78□□□□□ -1.65
VPS13D-214ENST00000620676 ZNF175Q9Y473 711 aa4.78□□□□□ -1.65
VPS13D-214ENST00000620676 RBM7Q9Y580 266 aaKnown RBP4.78□□□□□ -1.65
VPS13D-214ENST00000620676 GPR45Q9Y5Y3 372 aa4.78□□□□□ -1.65
VPS13D-214ENST00000620676 MICAL3Q7RTP6 2002 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 MAP2P11137 1827 aaKnown RBP4.77□□□□□ -1.65
VPS13D-214ENST00000620676 PPP3CBP16298 524 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 DNAJB2P25686 324 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 HOXA10P31260 410 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-214ENST00000620676 HYAL2Q12891 473 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 EBPQ15125 230 aaKnown RBP4.77□□□□□ -1.65
VPS13D-214ENST00000620676 RFTN2Q52LD8 501 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-214ENST00000620676 CCNJQ5T5M9 372 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 ZPBP2Q6X784 338 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 NKX3-1Q99801 234 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-214ENST00000620676 ZNF559Q9BR84 538 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 ST6GALNAC5Q9BVH7 336 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 SMOC2Q9H3U7 446 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 WSB2Q9NYS7 404 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-214ENST00000620676 ZNF214Q9UL59 606 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-214ENST00000620676 SRPK3Q9UPE1 567 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 TRAPPC6AO75865 159 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 ZP3P21754 424 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 PTBP1P26599 531 aaKnown RBP eCLIP4.77□□□□□ -1.651e-7■■■■■ 29.3
VPS13D-214ENST00000620676 RPS13P62277 151 aaKnown RBP4.77□□□□□ -1.65
VPS13D-214ENST00000620676 NCMAPQ5T1S8 102 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 CST9LP1Q5W188 147 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 FRMPD2BQ6IN97 320 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 COMMD4Q9H0A8 199 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 NELFAQ9H3P2 528 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 PCYT1BQ9Y5K3 369 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-214ENST00000620676 UGT2B10P36537 528 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 ARL4DP49703 201 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 SSTP61278 116 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 SEC61A1P61619 476 aaKnown RBP4.77□□□□□ -1.65
VPS13D-214ENST00000620676 FNDC3BQ53EP0 1204 aaKnown RBP4.77□□□□□ -1.65
VPS13D-214ENST00000620676 TECRLQ5HYJ1 363 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 FRG2Q64ET8 278 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 HEPHL1Q6MZM0 1159 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 ZNF783Q6ZMS7 281 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 MON1AQ86VX9 555 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 HORMAD2Q8N7B1 307 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 FRG2BQ96QU4 278 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 C12orf10Q9HB07 376 aa4.77□□□□□ -1.65
VPS13D-214ENST00000620676 PSORS1C1Q9UIG5 152 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms