RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 FBXO45P0C2W1 286 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 CASRP41180 1078 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 RFX3P48380 749 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 GSK3BP49841 420 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 NCALDP61601 193 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 SCARB2Q14108 478 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 SYPL1Q16563 259 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 TBR1Q16650 682 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.55□□□□□ -0.24
CD48-203ENST00000613788 VMACQ2NL98 169 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 PRAMEF8Q5VWM4 474 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 PRAMEF7Q5VXH5 474 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 REEP3Q6NUK4 255 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 LRRC74BQ6ZQY2 392 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 PTOV1Q86YD1 416 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 GPALPP1Q8IXQ4 340 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 ZZZ3Q8IYH5 903 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 BEST3Q8N1M1 668 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 ANKFN1Q8N957 763 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 HIPK4Q8NE63 616 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 PMM1Q92871 262 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 MAL2Q969L2 176 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 MCUR1Q96AQ8 359 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 ADOQ96SZ5 270 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 KCTD14Q9BQ13 255 aaPredicted RBP13.55□□□□□ -0.24
CD48-203ENST00000613788 LRMDAQ9H2I8 198 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 MMADHCQ9H3L0 296 aaPredicted RBP13.55□□□□□ -0.24
CD48-203ENST00000613788 ZBTB20Q9HC78 741 aaPredicted RBP13.55□□□□□ -0.24
CD48-203ENST00000613788 CD300AQ9UGN4 299 aa13.55□□□□□ -0.24
CD48-203ENST00000613788 A0A0G2JPF8 293 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 PRAMEF27A3QJZ7 478 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 PRORSD1PA6NEY8 169 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 OR6C70A6NIJ9 312 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 HNRNPCL2B2RXH8 293 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 HNRNPCL3B7ZW38 293 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 MKRN2OSH3BPM6 223 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 RRP9O43818 475 aaKnown RBP13.54□□□□□ -0.24
CD48-203ENST00000613788 HS6ST1O60243 411 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 TSPAN2O60636 221 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 ZNF354AO60765 605 aaPredicted RBP13.54□□□□□ -0.24
CD48-203ENST00000613788 H6PDO95479 791 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 HNRNPCL4P0DMR1 293 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 HSD17B1P14061 328 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 PGM1P36871 562 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 SOX3P41225 446 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 HLCSP50747 726 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 MFAP5Q13361 173 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 VEZF1Q14119 521 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 EFR3AQ14156 821 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 CCNJQ5T5M9 372 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 INTS11Q5TA45 600 aaKnown RBP13.54□□□□□ -0.24
CD48-203ENST00000613788 AP1ARQ63HQ0 302 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 LYPD8Q6UX82 237 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 IL20RBQ6UXL0 311 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 LINC00696Q6ZRV3 163 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 NUP54Q7Z3B4 507 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 MICU2Q8IYU8 434 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 RNF148Q8N7C7 305 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 NFKBIDQ8NI38 313 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 EFHD2Q96C19 240 aaPredicted RBP13.54□□□□□ -0.24
CD48-203ENST00000613788 TMCO6Q96DC7 493 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 SPACA9Q96E40 222 aaPredicted RBP13.54□□□□□ -0.24
CD48-203ENST00000613788 TMEM19Q96HH6 336 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 COL21A1Q96P44 957 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 UTP23Q9BRU9 249 aaKnown RBP13.54□□□□□ -0.24
CD48-203ENST00000613788 ZNF350Q9GZX5 532 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 HOXD1Q9GZZ0 328 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 MTHFD2LQ9H903 347 aaPredicted RBP13.54□□□□□ -0.24
CD48-203ENST00000613788 HPF1Q9NWY4 346 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 ANGPT4Q9Y264 503 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 WDR45Q9Y484 360 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 PCDHGA9Q9Y5G4 932 aaKnown RBP13.54□□□□□ -0.24
CD48-203ENST00000613788 TP53I11O14683 189 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 GSTA4O15217 222 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 GMNNO75496 209 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 OR6B1O95007 311 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 IGKV1D-16P01601 117 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 HTR1EP28566 365 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 PCGF2P35227 344 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 CYB561P49447 251 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 RPP38P78345 283 aaKnown RBP13.54□□□□□ -0.24
CD48-203ENST00000613788 OC90Q02509 493 aaPredicted RBP13.54□□□□□ -0.24
CD48-203ENST00000613788 FUT5Q11128 374 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 CEACAM7Q14002 265 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 NTRK2Q16620 822 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 ZNF791Q3KP31 576 aaPredicted RBP13.54□□□□□ -0.24
CD48-203ENST00000613788 BBS10Q8TAM1 723 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 TTC9Q92623 222 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 SGCZQ96LD1 299 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 SMAD5Q99717 465 aaKnown RBP13.54□□□□□ -0.24
CD48-203ENST00000613788 TREX2Q9BQ50 279 aaPredicted RBP13.54□□□□□ -0.24
CD48-203ENST00000613788 CADM1Q9BY67 442 aaKnown RBP13.54□□□□□ -0.24
CD48-203ENST00000613788 RNF32Q9H0A6 362 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 SAP130Q9H0E3 1048 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 BCL2L10Q9HD36 194 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 FBXO34Q9NWN3 711 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 PACSIN3Q9UKS6 424 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 PCDHGB7Q9Y5F8 929 aa13.54□□□□□ -0.24
CD48-203ENST00000613788 ZFHX4Q86UP3 3567 aa13.53□□□□□ -0.24
CD48-203ENST00000613788 CFAP47Q6ZTR5 3102 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms