RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 COX18Q8N8Q8 333 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 FBXO15Q8NCQ5 510 aaPredicted RBP11.85□□□□□ -0.51
LIG1-221ENST00000613670 FANK1Q8TC84 345 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 SETD7Q8WTS6 366 aaKnown RBP11.85□□□□□ -0.51
LIG1-221ENST00000613670 SDHCQ99643 169 aaPredicted RBP11.85□□□□□ -0.51
LIG1-221ENST00000613670 OR51J1Q9H342 316 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 RANBP3Q9H6Z4 567 aaPredicted RBP11.85□□□□□ -0.51
LIG1-221ENST00000613670 CACNG2Q9Y698 323 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.84□□□□□ -0.51
LIG1-221ENST00000613670 UBE2QL1A1L167 161 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 OR7A10O76100 309 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 LCN1P31025 176 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 TRIM23P36406 574 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 CLDN2P57739 230 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 HSF2Q03933 536 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 ZMYND11Q15326 602 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 ODF4Q2M2E3 257 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 MINDY4Q4G0A6 757 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 FAM27D1Q5T7N8 215 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 RNF165Q6ZSG1 346 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 HDDC2Q7Z4H3 204 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 COMMD7Q86VX2 200 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 SERPINA12Q8IW75 414 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 OR56A1Q8NGH5 318 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 OR9A2Q8NGT5 310 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 ADAMTS19Q8TE59 1207 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 CHAC2Q8WUX2 184 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 DNAJA4Q8WW22 397 aaPredicted RBP11.84□□□□□ -0.51
LIG1-221ENST00000613670 CLIP3Q96DZ5 547 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 PCBD2Q9H0N5 130 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 SLITRK2Q9H156 845 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 OR10A4Q9H209 315 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 MIXL1Q9H2W2 232 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 TMEM27Q9HBJ8 222 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 NLGN3Q9NZ94 848 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 HCN3Q9P1Z3 774 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 KLHL21Q9UJP4 597 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 DNAH12Q6ZR08 3092 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 ZNF646O15015 1829 aaPredicted RBP11.84□□□□□ -0.51
LIG1-221ENST00000613670 WASH3PC4AMC7 463 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 TEX46H3BTG2 121 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 PAK4O96013 591 aaPredicted RBP11.84□□□□□ -0.51
LIG1-221ENST00000613670 IFNGP01579 166 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 MT-ND4P03905 459 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 GKN3PP0CG01 181 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 TRAPPC2P0DI81 140 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 TRAPPC2BP0DI82 140 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 ELK1P19419 428 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 ACVR2AP27037 513 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 EVI2BP34910 448 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 MAZP56270 477 aaKnown RBP11.84□□□□□ -0.51
LIG1-221ENST00000613670 STXBP1P61764 594 aaKnown RBP11.84□□□□□ -0.51
LIG1-221ENST00000613670 TEKQ02763 1124 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 OCLNQ16625 522 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 TSEN54Q7Z6J9 526 aaKnown RBP11.84□□□□□ -0.51
LIG1-221ENST00000613670 YAF2Q8IY57 180 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 OR4M1Q8NGD0 313 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 CEP76Q8TAP6 659 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 NXF2Q9GZY0 626 aaKnown RBP11.84□□□□□ -0.51
LIG1-221ENST00000613670 IKZF2Q9UKS7 526 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 NPIPA5A0A0B4J1W7 369 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 NPIPA7E9PJI5 369 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 L7N2F9 121 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 KDM4BO94953 1096 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 C1QBP02746 253 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 NPIPA8P0DM63 369 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 CPEP16870 476 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 C6orf132Q5T0Z8 1188 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 CCNJQ5T5M9 372 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 KLHDC8AQ8IYD2 350 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 BBS1Q8NFJ9 593 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 SMAP2Q8WU79 429 aaPredicted RBP11.84□□□□□ -0.51
LIG1-221ENST00000613670 RBCK1Q9BYM8 510 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 GLIPR2Q9H4G4 154 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 SLC7A7Q9UM01 511 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 AK6Q9Y3D8 172 aaKnown RBP11.84□□□□□ -0.51
LIG1-221ENST00000613670 OR1A2Q9Y585 309 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 PCDHGB7Q9Y5F8 929 aa11.84□□□□□ -0.51
LIG1-221ENST00000613670 LRRN3E7EW58 273 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 PSMD9O00233 223 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 RFXAPO00287 272 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 SLC31A1O15431 190 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 FLRT2O43155 660 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 GMFGO60234 142 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 TMPRSS11DO60235 418 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 ABLIM3O94929 683 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 NTN1O95631 604 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 HK1P19367 917 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 EDNRAP25101 427 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 PPM1AP35813 382 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 CD79BP40259 229 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 SNTA1Q13424 505 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 GPR176Q14439 515 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 HENMT1Q5T8I9 393 aaKnown RBP11.83□□□□□ -0.52
LIG1-221ENST00000613670 SYT9Q86SS6 491 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 CPXM2Q8N436 756 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 TNFAIP8L1Q8WVP5 186 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 CHFRQ96EP1 664 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 SLC41A3Q96GZ6 507 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 LRRN3Q9H3W5 708 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms