RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PPM1BO75688 479 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 IGKV1D-16P01601 117 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 BCHEP06276 602 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 FBXO45P0C2W1 286 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 HTR1EP28566 365 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 LCN1P31025 176 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 KRT20P35900 424 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 PGM1P36871 562 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 TMED10P49755 219 aaKnown RBP13.23□□□□□ -0.29
UPF1-211ENST00000600868 CRISP3P54108 245 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 PNLIPRP2P54317 469 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 CDK6Q00534 326 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 PLCXD2Q0VAA5 305 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 CEACAM7Q14002 265 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 SCARB2Q14108 478 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 VEZF1Q14119 521 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 FXNQ16595 210 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 GPAT3Q53EU6 434 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 CCNJQ5T5M9 372 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 ABHD17BQ5VST6 288 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 REEP3Q6NUK4 255 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 PGM2L1Q6PCE3 622 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 OPN5Q6U736 354 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 DND1Q8IYX4 353 aaKnown RBP13.23□□□□□ -0.29
UPF1-211ENST00000600868 ANKFN1Q8N957 763 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 HIPK4Q8NE63 616 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 ASB15Q8WXK1 588 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 DIO2Q92813 273 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 LMF1Q96S06 567 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 ZNF350Q9GZX5 532 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 SAP130Q9H0E3 1048 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 BCL2L10Q9HD36 194 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 STMN3Q9NZ72 180 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 GMPR2Q9P2T1 348 aaKnown RBP13.23□□□□□ -0.29
UPF1-211ENST00000600868 PACSIN3Q9UKS6 424 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 ANKRD11Q6UB99 2663 aaPredicted RBP13.22□□□□□ -0.29
UPF1-211ENST00000600868 C5orf58C9J3I9 102 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 REM1O75628 298 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 PGM3O95394 542 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 H6PDO95479 791 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 CHRM4P08173 479 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 ATP6V1C1P21283 382 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 ME2P23368 584 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 IL12BP29460 328 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 SOX3P41225 446 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 CXADRP78310 365 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 HPCAP84074 193 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 MFAP5Q13361 173 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 ZNF791Q3KP31 576 aaPredicted RBP13.22□□□□□ -0.29
UPF1-211ENST00000600868 BORAQ6PGQ7 559 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 FIGNL1Q6PIW4 674 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 ISLR2Q6UXK2 745 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 FRRS1Q6ZNA5 592 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 PTRH1Q86Y79 214 aaKnown RBP13.22□□□□□ -0.29
UPF1-211ENST00000600868 GPALPP1Q8IXQ4 340 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 PRR22Q8IZ63 422 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 FBXW8Q8N3Y1 598 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 RNF148Q8N7C7 305 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 FDCSPQ8NFU4 85 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 NFKBIDQ8NI38 313 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 PMM1Q92871 262 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 MCUR1Q96AQ8 359 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 SPACA9Q96E40 222 aaPredicted RBP13.22□□□□□ -0.29
UPF1-211ENST00000600868 TMEM19Q96HH6 336 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 CLPTM1LQ96KA5 538 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 COL21A1Q96P44 957 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 TREX2Q9BQ50 279 aaPredicted RBP13.22□□□□□ -0.29
UPF1-211ENST00000600868 SLC38A1Q9H2H9 487 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 ZNF552Q9H707 407 aaPredicted RBP13.22□□□□□ -0.29
UPF1-211ENST00000600868 TRIM45Q9H8W5 580 aaPredicted RBP13.22□□□□□ -0.29
UPF1-211ENST00000600868 FBXO34Q9NWN3 711 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 ABI3Q9P2A4 366 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 USP22Q9UPT9 525 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 ANGPT4Q9Y264 503 aa13.22□□□□□ -0.29
UPF1-211ENST00000600868 CPAMD8Q8IZJ3 1885 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 CELSR3Q9NYQ7 3312 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 A0A0G2JPF8 293 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 HNRNPCL2B2RXH8 293 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 HNRNPCL3B7ZW38 293 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 FCMRO60667 390 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 OR6B1O95007 311 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 ZIC2O95409 532 aaPredicted RBP13.21□□□□□ -0.29
UPF1-211ENST00000600868 ITGB2P05107 769 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 HNRNPCL4P0DMR1 293 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 ETS2P15036 469 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 CHRNEQ04844 493 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 BNIP2Q12982 314 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 EFR3AQ14156 821 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 NTRK2Q16620 822 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 TBR1Q16650 682 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 INTS11Q5TA45 600 aaKnown RBP13.21□□□□□ -0.29
UPF1-211ENST00000600868 TYW3Q6IPR3 259 aaKnown RBP13.21□□□□□ -0.29
UPF1-211ENST00000600868 CCDC80Q76M96 950 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 NUP54Q7Z3B4 507 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 ZAR1Q86SH2 424 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 ULK2Q8IYT8 1036 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 BEST3Q8N1M1 668 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 ZNF619Q8N2I2 560 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 TMEM156Q8N614 296 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 BBS10Q8TAM1 723 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms