RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SRSF1Q07955 248 aaKnown RBP eCLIP13.75□□□□□ -0.21
UPF1-202ENST00000594243 LASP1Q14847 261 aaKnown RBP13.75□□□□□ -0.21
UPF1-202ENST00000594243 TIGD3Q6B0B8 471 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 CDC73Q6P1J9 531 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 Q6ZPB1 254 aaPredicted RBP13.75□□□□□ -0.21
UPF1-202ENST00000594243 MIER2Q8N344 545 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 ADAMTS15Q8TE58 950 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 JADE3Q92613 823 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 RELTQ969Z4 430 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 DTNBP1Q96EV8 351 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 CHMP6Q96FZ7 201 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 GNRHR2Q96P88 292 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 OR52E6Q96RD3 313 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 SIKE1Q9BRV8 207 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 YIPF4Q9BSR8 244 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 G6PC3Q9BUM1 346 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 PIGUQ9H490 435 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 ZNF703Q9H7S9 590 aaPredicted RBP13.75□□□□□ -0.21
UPF1-202ENST00000594243 ACKR4Q9NPB9 350 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 SDR39U1Q9NRG7 319 aaPredicted RBP13.75□□□□□ -0.21
UPF1-202ENST00000594243 SDHAF3Q9NRP4 125 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 DUSP22Q9NRW4 184 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 BTNL2Q9UIR0 455 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 NAV2Q8IVL1 2488 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 COL12A1Q99715 3063 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 A0A1B0GVC2 190 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 GXYLT2A0PJZ3 443 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 LRRC3CA6NJW4 275 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 DUXAA6NLW8 204 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 PRRG2O14669 202 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 GNB5O14775 395 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 HCN1O60741 890 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 SEMA7AO75326 666 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 CBR3O75828 277 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 GDF1P27539 372 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 IL12AP29459 219 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 LCN1P31025 176 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 CA7P43166 264 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 RFX3P48380 749 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 PER3P56645 1201 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 STX1BP61266 288 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 POU6F2P78424 691 aaPredicted RBP13.74□□□□□ -0.21
UPF1-202ENST00000594243 DUSP5Q16690 384 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 EXOSC6Q5RKV6 272 aaKnown RBP13.74□□□□□ -0.21
UPF1-202ENST00000594243 FNDC7Q5VTL7 733 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 C1QL3Q5VWW1 255 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 ANGPTL8Q6UXH0 198 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 C6orf120Q7Z4R8 191 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 ANKRD46Q86W74 232 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 TRIML2Q8N7C3 387 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 COX18Q8N8Q8 333 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 OR5AK3PQ8NH89 298 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 GOT1L1Q8NHS2 421 aaPredicted RBP13.74□□□□□ -0.21
UPF1-202ENST00000594243 FAM110BQ8TC76 370 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 STON2Q8WXE9 905 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 RMND5BQ96G75 393 aaPredicted RBP13.74□□□□□ -0.21
UPF1-202ENST00000594243 MARK4Q96L34 752 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 CCDC115Q96NT0 180 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 EBF4Q9BQW3 602 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 BTBD2Q9BX70 525 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 EXO5Q9H790 373 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 GALNT9Q9HCQ5 603 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 GPATCH2Q9NW75 528 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 ABCG2Q9UNQ0 655 aa13.74□□□□□ -0.21
UPF1-202ENST00000594243 TRGV5A0A0B4J1U4 118 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 C2orf72A6NCS6 295 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 OR14I1A6ND48 311 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 SNPHO15079 494 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 TRAPPC6AO75865 159 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 KCNK2O95069 426 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 MATN1P21941 496 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 EVI2BP34910 448 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 MRPL19P49406 292 aaKnown RBP13.73□□□□□ -0.21
UPF1-202ENST00000594243 MAN2A2P49641 1150 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 DGKQP52824 942 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 TOMM20Q15388 145 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.73□□□□□ -0.21
UPF1-202ENST00000594243 TRILQ7L0X0 811 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 PLCZ1Q86YW0 608 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 EID3Q8N140 333 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 FBXO30Q8TB52 745 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 FAM57AQ8TBR7 257 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 SSC4DQ8WTU2 575 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 RNF138Q8WVD3 245 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 PANX1Q96RD7 426 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 HHATLQ9HCP6 504 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 ERRFI1Q9UJM3 462 aaPredicted RBP13.73□□□□□ -0.21
UPF1-202ENST00000594243 C15orf41Q9Y2V0 281 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 WIF1Q9Y5W5 379 aa13.73□□□□□ -0.21
UPF1-202ENST00000594243 RNF103-CHMP3A0A140T963 221 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 CCL21O00585 134 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 AQP7O14520 342 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 BCKDKO14874 412 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 FADS1O60427 444 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 UTS2O95399 124 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 IGKV1D-16P01601 117 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 HPNP05981 417 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 CELA3AP09093 270 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 PTPN6P29350 595 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 POLR2JP52435 117 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms