RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 DAPP1Q9UN19 280 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 MGAT4BQ9UQ53 548 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 PCDHGB7Q9Y5F8 929 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 LOC105369274A0A096LPK9 316 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 LOC102723532A0A0G2JNH3 316 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 PLPP1O14494 284 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 TFECO14948 347 aaPredicted RBP9.23□□□□□ -0.93
LIG3-216ENST00000593099 MGRN1O60291 552 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 NOS1APO75052 506 aaPredicted RBP9.23□□□□□ -0.93
LIG3-216ENST00000593099 EFEMP2O95967 443 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 ETV5P41161 510 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 ITGADQ13349 1161 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 RIPK1Q13546 671 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 ELAVL1Q15717 326 aaKnown RBP9.23□□□□□ -0.93
LIG3-216ENST00000593099 DCST2Q5T1A1 773 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 TCEAL6Q6IPX3 200 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 FAM111BQ6SJ93 734 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 LAS2Q8IYD9 372 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 NLGN4XQ8N0W4 816 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 OR4N4Q8N0Y3 316 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 CARFQ8N187 725 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 MEIOBQ8N635 442 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 AQP11Q8NBQ7 271 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 TCEAL3Q969E4 200 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 DGCR14Q96DF8 476 aaKnown RBP9.23□□□□□ -0.93
LIG3-216ENST00000593099 DGCR6LQ9BY27 220 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 UBQLN4Q9NRR5 601 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 RHCGQ9UBD6 479 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 SLC35A3Q9Y2D2 325 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 MEN1O00255 615 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 TP73O15350 636 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 GALR3O60755 368 aaPredicted RBP9.22□□□□□ -0.93
LIG3-216ENST00000593099 PABPC4LP0CB38 370 aaKnown RBP9.22□□□□□ -0.93
LIG3-216ENST00000593099 SMSP52788 366 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 LIM2P55344 173 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 MAPK11Q15759 364 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 PAGE3Q5JUK9 113 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 LINC00696Q6ZRV3 163 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 GHDCQ8N2G8 530 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 PROKR2Q8NFJ6 384 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 AKAP1Q92667 903 aaKnown RBP eCLIP9.22□□□□□ -0.93
LIG3-216ENST00000593099 TMBIM1Q969X1 311 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 RFT1Q96AA3 541 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 DHRS1Q96LJ7 313 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 TSSK6Q9BXA6 273 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 ZMAT5Q9UDW3 170 aaKnown RBP9.22□□□□□ -0.93
LIG3-216ENST00000593099 ZSCAN5BA6NJL1 495 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 ZNF879B4DU55 563 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 FARS2O95363 451 aaKnown RBP9.22□□□□□ -0.93
LIG3-216ENST00000593099 B3GALT4O96024 378 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 FASLGP48023 281 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 PPP1R8Q12972 351 aaKnown RBP9.22□□□□□ -0.93
LIG3-216ENST00000593099 PDK3Q15120 406 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 RASSF6Q6ZTQ3 369 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 ZNF547Q8IVP9 402 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 CCDC28AQ8IWP9 274 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 CDS1Q92903 461 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 OR10A5Q9H207 317 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 ELL3Q9HB65 397 aaPredicted RBP9.22□□□□□ -0.93
LIG3-216ENST00000593099 MOV10Q9HCE1 1003 aaKnown RBP9.22□□□□□ -0.93
LIG3-216ENST00000593099 ASB6Q9NWX5 421 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 GRHPRQ9UBQ7 328 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 MRPS7Q9Y2R9 242 aaKnown RBP9.22□□□□□ -0.93
LIG3-216ENST00000593099 EP400Q96L91 3159 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 MGAMO43451 1857 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 H6PDO95479 791 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 TSPAN12O95859 305 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 CELA2BP08218 269 aaPredicted RBP9.22□□□□□ -0.93
LIG3-216ENST00000593099 FURINP09958 794 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 CBLP22681 906 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 ZNF45Q02386 682 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 MFSD13AQ14CX5 517 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 PAQR7Q86WK9 346 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 RPS19BP1Q86WX3 136 aaKnown RBP9.22□□□□□ -0.93
LIG3-216ENST00000593099 OR5T3Q8NGG3 340 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 MAL2Q969L2 176 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 SGTBQ96EQ0 304 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 CCNL2Q96S94 520 aaPredicted RBP9.22□□□□□ -0.93
LIG3-216ENST00000593099 NOX1Q9Y5S8 564 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 SCN5AQ14524 2016 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 EP300Q09472 2414 aaPredicted RBP9.22□□□□□ -0.93
LIG3-216ENST00000593099 KLK8O60259 260 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 ANGPTL1O95841 491 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 FESP07332 822 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 UBL4AP11441 157 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 MAOAP21397 527 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 GDF1P27539 372 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 CHN2P52757 468 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 IL11RAQ14626 422 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 TLR1Q15399 786 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 ALG10BQ5I7T1 473 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 HES3Q5TGS1 186 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 ZNF100Q8IYN0 542 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 ZADH2Q8N4Q0 377 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 TEX19Q8NA77 164 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 TMEM178AQ8NBL3 297 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 NLGN4YQ8NFZ3 816 aaPredicted RBP9.22□□□□□ -0.93
LIG3-216ENST00000593099 OR7G1Q8NGA0 311 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 OR8J2Q8NGG1 315 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 OR5D16Q8NGK9 328 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms