RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 SDF2Q99470 211 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 ANKHQ9HCJ1 492 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 TVP23BQ9NYZ1 205 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 SATB2Q9UPW6 733 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 PCDHGA3Q9Y5H0 932 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 A0A1W2PR77 199 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 ANKRD33BA6NCL7 494 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 AP3D1O14617 1153 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 THBS1P07996 1170 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 ZNF12P17014 697 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 RPS4Y1P22090 263 aaKnown RBP18.37■□□□□ 0.53
CLIP3-206ENST00000593074 IFNA8P32881 189 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 GRK5P34947 590 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 SMSP52788 366 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 TSPAN31Q12999 210 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 DUSP8Q13202 625 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 RNLSQ5VYX0 342 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 ZNF836Q6ZNA1 936 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 USP43Q70EL4 1123 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 OR6Q1Q8NGQ2 317 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 WDR36Q8NI36 951 aaKnown RBP18.37■□□□□ 0.53
CLIP3-206ENST00000593074 DACH2Q96NX9 599 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 CCDC3Q9BQI4 270 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 PCED1AQ9H1Q7 454 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 DUSP22Q9NRW4 184 aa18.37■□□□□ 0.53
CLIP3-206ENST00000593074 LSM2Q9Y333 95 aaKnown RBP18.37■□□□□ 0.53
CLIP3-206ENST00000593074 hCG_2014768A0A024R1R8 64 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 AGAP5A6NIR3 686 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 SOX1O00570 391 aaPredicted RBP18.36■□□□□ 0.53
CLIP3-206ENST00000593074 HCRTR1O43613 425 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 OR5F1O95221 314 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 ST6GAL1P15907 406 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 MAOBP27338 520 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 CSTF2P33240 577 aaKnown RBP eCLIP18.36■□□□□ 0.53
CLIP3-206ENST00000593074 OMPP47874 163 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 EEF1A1P68104 462 aaKnown RBP18.36■□□□□ 0.53
CLIP3-206ENST00000593074 RHAGQ02094 409 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 TMED1Q13445 227 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 LARS2Q15031 903 aaKnown RBP18.36■□□□□ 0.53
CLIP3-206ENST00000593074 NCF4Q15080 339 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 PRICKLE4Q2TBC4 344 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 EIPR1Q53HC9 387 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 ACSM5Q6NUN0 579 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 PLEKHM3Q6ZWE6 761 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 MRGPREQ86SM8 312 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 TMCO5AQ8N6Q1 288 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 MGLLQ99685 303 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 TSSK6Q9BXA6 273 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 PLA2G12AQ9BZM1 189 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 CHRDQ9H2X0 955 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 CACYBPQ9HB71 228 aaKnown RBP18.36■□□□□ 0.53
CLIP3-206ENST00000593074 FAM60AQ9NP50 221 aa18.36■□□□□ 0.53
CLIP3-206ENST00000593074 NME1P15531 152 aaKnown RBP18.35■□□□□ 0.53
CLIP3-206ENST00000593074 HOXC5Q00444 222 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 MGAT2Q10469 447 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 MED22Q15528 200 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 DECR1Q16698 335 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 SYT14P1Q58G82 188 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 ZCCHC12Q6PEW1 402 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 ZNF730Q6ZMV8 503 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 MFSD4AQ8N468 514 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 CDRT4Q8N9R6 151 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 ACOT11Q8WXI4 607 aaPredicted RBP18.35■□□□□ 0.53
CLIP3-206ENST00000593074 TMEM80Q96HE8 168 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 STACQ99469 402 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 MCHR1Q99705 422 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 TAPBPLQ9BX59 468 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 SAP130Q9H0E3 1048 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 ADAP2Q9NPF8 381 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 MAT2BQ9NZL9 334 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 ZNF232Q9UNY5 417 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 DOLKQ9UPQ8 538 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 TLX2O43763 284 aaPredicted RBP18.35■□□□□ 0.53
CLIP3-206ENST00000593074 THY1P04216 161 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 ALOX5P09917 674 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 HSMCR30P0CW71 290 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 NT5EP21589 574 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 MAP3K8P41279 467 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 MAZP56270 477 aaKnown RBP18.35■□□□□ 0.53
CLIP3-206ENST00000593074 RAB38P57729 211 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 RAB15P59190 212 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 RACK1P63244 317 aaKnown RBP18.35■□□□□ 0.53
CLIP3-206ENST00000593074 DOC2BQ14184 412 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 DCST2Q5T1A1 773 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 RASSF6Q6ZTQ3 369 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 PRICKLE2Q7Z3G6 844 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 BCDIN3DQ7Z5W3 292 aaKnown RBP18.35■□□□□ 0.53
CLIP3-206ENST00000593074 GKN2Q86XP6 184 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 ZNF619Q8N2I2 560 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 C19orf47Q8N9M1 422 aaKnown RBP18.35■□□□□ 0.53
CLIP3-206ENST00000593074 AVL9Q8NBF6 648 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 TOR1AIP2Q8NFQ8 470 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 PIGXQ8TBF5 258 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 LMX1AQ8TE12 382 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 CTHRC1Q96CG8 243 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 OR51E2Q9H255 320 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 EGLN3Q9H6Z9 239 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 STARD5Q9NSY2 213 aa18.35■□□□□ 0.53
CLIP3-206ENST00000593074 COLQQ9Y215 455 aaPredicted RBP18.35■□□□□ 0.53
CLIP3-206ENST00000593074 ERGIC3Q9Y282 383 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms