RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 PILRBQ9UKJ0 227 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 UNC13CQ8NB66 2214 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 ARID1BQ8NFD5 2236 aaPredicted RBP13.21□□□□□ -0.3
LIG3-205ENST00000585941 A0A1B0GTQ1 180 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 TMEM150CB9EJG8 249 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 RGS10O43665 173 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 XPNPEP2O43895 674 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 BRINP1O60477 761 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 NOL3O60936 208 aaKnown RBP13.21□□□□□ -0.3
LIG3-205ENST00000585941 CYP7B1O75881 506 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 SEC14L2O76054 403 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 OR5F1O95221 314 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 HTR1AP08908 422 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 NID1P14543 1247 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 S1PR1P21453 382 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 CHMP24386 653 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 DCKP27707 260 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 GABRA3P34903 492 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 IDH2P48735 452 aaKnown RBP13.21□□□□□ -0.3
LIG3-205ENST00000585941 EEF1A1P68104 462 aaKnown RBP13.21□□□□□ -0.3
LIG3-205ENST00000585941 BNC1Q01954 994 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 TARDBPQ13148 414 aaKnown RBP eCLIP13.21□□□□□ -0.3
LIG3-205ENST00000585941 SQSTM1Q13501 440 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 AMZ1Q400G9 498 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 XAF1Q6GPH4 301 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 C1orf94Q6P1W5 598 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 RANBP3LQ86VV4 465 aaPredicted RBP13.21□□□□□ -0.3
LIG3-205ENST00000585941 ZNF540Q8NDQ6 660 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 OR4K5Q8NGD3 323 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 OR13F1Q8NGS4 319 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 SERTAD3Q9UJW9 196 aa13.21□□□□□ -0.3
LIG3-205ENST00000585941 HEMK1Q9Y5R4 338 aaPredicted RBP13.21□□□□□ -0.3
LIG3-205ENST00000585941 SH3D21A4FU49 640 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 SYNDIG1LA6NDD5 238 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 H3BMH7 237 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 KRT20P35900 424 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 MAT1AQ00266 395 aaKnown RBP13.2□□□□□ -0.3
LIG3-205ENST00000585941 NR0B2Q15466 257 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 GPR68Q15743 365 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 ZNF836Q6ZNA1 936 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 PLEKHM3Q6ZWE6 761 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 RRM2BQ7LG56 351 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 PRSS48Q7RTY5 328 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 KANSL1Q7Z3B3 1105 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 RABEPKQ7Z6M1 372 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 HMGN2P46Q86SG4 172 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 Q8N9G6 341 aaPredicted RBP13.2□□□□□ -0.3
LIG3-205ENST00000585941 MORN4Q8NDC4 146 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 APH1BQ8WW43 257 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 TRUB1Q8WWH5 349 aaKnown RBP13.2□□□□□ -0.3
LIG3-205ENST00000585941 DIO2Q92813 273 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 EDAQ92838 391 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 MYDGFQ969H8 173 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 MCHR1Q99705 422 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 NDC1Q9BTX1 674 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 RBCK1Q9BYM8 510 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 CCDC90BQ9GZT6 254 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 FOLH1BQ9HBA9 442 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 PAK1IP1Q9NWT1 392 aaPredicted RBP13.2□□□□□ -0.3
LIG3-205ENST00000585941 REV1Q9UBZ9 1251 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 NDOR1Q9UHB4 597 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 CHST2Q9Y4C5 530 aa13.2□□□□□ -0.3
LIG3-205ENST00000585941 SDK1Q7Z5N4 2213 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 FMO6PO60774 539 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 FUT4P22083 530 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 HOXD12P35452 270 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 SEPHS1P49903 392 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 EMDP50402 254 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 TMBIM6P55061 237 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 CFHR1Q03591 330 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 FUT7Q11130 342 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 DECR1Q16698 335 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 PLK5Q496M5 336 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 ENTPD8Q5MY95 495 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 SLX4IPQ5VYV7 408 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 Q6ZPB1 254 aaPredicted RBP13.19□□□□□ -0.3
LIG3-205ENST00000585941 ERI1Q8IV48 349 aaKnown RBP13.19□□□□□ -0.3
LIG3-205ENST00000585941 CLIP4Q8N3C7 705 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 GALNT15Q8N3T1 639 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 OR7G1Q8NGA0 311 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 OR4C6Q8NH72 309 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 GNPDA2Q8TDQ7 276 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 PIK3R3Q92569 461 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 MUL1Q969V5 352 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 ISOC1Q96CN7 298 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 DOK1Q99704 481 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 ZNF768Q9H5H4 540 aaKnown RBP13.19□□□□□ -0.3
LIG3-205ENST00000585941 KRCC1Q9NPI7 259 aaPredicted RBP13.19□□□□□ -0.3
LIG3-205ENST00000585941 C14orf105Q9NVL8 296 aa13.19□□□□□ -0.3
LIG3-205ENST00000585941 GPR55Q9Y2T6 319 aaPredicted RBP13.19□□□□□ -0.3
LIG3-205ENST00000585941 TGFBR3LH3BV60 316 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 DYRK3O43781 588 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 KCNK2O95069 426 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 GABRB1P18505 474 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 PCMT1P22061 227 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 CSF2RBP32927 897 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 TRHRP34981 398 aaPredicted RBP13.18□□□□□ -0.3
LIG3-205ENST00000585941 GCGRP47871 477 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 PSMD4P55036 377 aaKnown RBP13.18□□□□□ -0.3
LIG3-205ENST00000585941 FOXD4Q12950 439 aaPredicted RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms