RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 MANBAO00462 879 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 ACOX3O15254 700 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 HCRTR2O43614 444 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 ERAL1O75616 437 aaKnown RBP6.09□□□□□ -1.43
VPS53-213ENST00000572334 TGM6O95932 706 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 RAF1P04049 648 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 RBP1P09455 135 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 TMIGD3P0DMS9 266 aaPredicted RBP6.09□□□□□ -1.43
VPS53-213ENST00000572334 COL6A2P12110 1019 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 ACADSP16219 412 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 ZNF708P17019 499 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 CD53P19397 219 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 CSNK2A2P19784 350 aaPredicted RBP6.09□□□□□ -1.43
VPS53-213ENST00000572334 DNASE1P24855 282 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 HTR6P50406 440 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 CLCQ05315 142 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 PLCXD2Q0VAA5 305 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 SNTA1Q13424 505 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 TOMM20Q15388 145 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 TAF11Q15544 211 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 CCDC92Q53HC0 331 aaPredicted RBP6.09□□□□□ -1.43
VPS53-213ENST00000572334 C22orf34Q6ZV56 151 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 CCDC80Q76M96 950 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 PAGE2Q7Z2X7 111 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 CXorf67Q86X51 503 aaPredicted RBP6.09□□□□□ -1.43
VPS53-213ENST00000572334 PLCZ1Q86YW0 608 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 TRIM42Q8IWZ5 723 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 CCDC116Q8IYX3 515 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 CHDHQ8NE62 594 aaPredicted RBP6.09□□□□□ -1.43
VPS53-213ENST00000572334 OR4N2Q8NGD1 307 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 OR9A2Q8NGT5 310 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 GOT1L1Q8NHS2 421 aaPredicted RBP6.09□□□□□ -1.43
VPS53-213ENST00000572334 SELENOMQ8WWX9 145 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 KAT2AQ92830 837 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 TMBIM1Q969X1 311 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 ATP6V1E2Q96A05 226 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 KLHL29Q96CT2 875 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 SLC35A4Q96G79 324 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 APIPQ96GX9 242 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 BTBD9Q96Q07 612 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 TMEM237Q96Q45 408 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 PAFAH2Q99487 392 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 MRPL57Q9BQC6 102 aaKnown RBP6.09□□□□□ -1.43
VPS53-213ENST00000572334 ACPTQ9BZG2 426 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 ELOVL6Q9H5J4 265 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 TMBIM4Q9HC24 238 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 PRM3Q9NNZ6 103 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 GALNT8Q9NY28 637 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 AHSPQ9NZD4 102 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 FLRT3Q9NZU0 649 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 TMEM216Q9P0N5 145 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 BCAP29Q9UHQ4 241 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 PAIP2BQ9ULR5 123 aaKnown RBP6.09□□□□□ -1.43
VPS53-213ENST00000572334 WIF1Q9Y5W5 379 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 CR1P17927 2039 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 PLCE1Q9P212 2302 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 YLPM1P49750 1951 aaKnown RBP6.08□□□□□ -1.44
VPS53-213ENST00000572334 ABCA1O95477 2261 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 A8MXE2 369 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 DEFB108AA8MXU0 73 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 EEF1E1-BLOC1S5C9J1V9 151 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 H0YC42 278 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 PLOD2O00469 737 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 EEF1E1O43324 174 aaKnown RBP6.08□□□□□ -1.44
VPS53-213ENST00000572334 DLX3O60479 287 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 CDH16O75309 829 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 E2F6O75461 281 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 CBR3O75828 277 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 PSMG1O95456 288 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 OTCP00480 354 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 INHBAP08476 426 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 IL3P08700 152 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 CYP4B1P13584 511 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 IDO1P14902 403 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 FOSL1P15407 271 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 LOXP28300 417 aaPredicted RBP6.08□□□□□ -1.44
VPS53-213ENST00000572334 SRD5A2P31213 254 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 CCKARP32238 428 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 PHBP35232 272 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 TPD52P55327 224 aaPredicted RBP6.08□□□□□ -1.44
VPS53-213ENST00000572334 DCAF7P61962 342 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 TRA2BP62995 288 aaKnown RBP6.08□□□□□ -1.44
VPS53-213ENST00000572334 RPP38P78345 283 aaKnown RBP6.08□□□□□ -1.44
VPS53-213ENST00000572334 PSG6Q00889 435 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 SRYQ05066 204 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 POU4F3Q15319 338 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 GSTA3Q16772 222 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 ZNF678Q5SXM1 525 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 OR5M10Q6IEU7 315 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 VWA1Q6PCB0 445 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 ZNF474Q6S9Z5 364 aaPredicted RBP6.08□□□□□ -1.44
VPS53-213ENST00000572334 CAMKMTQ7Z624 323 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 LUZP2Q86TE4 346 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 KIF18BQ86Y91 864 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 GCNT2Q8N0V5 402 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 CDYL2Q8N8U2 506 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 FADS6Q8N9I5 356 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 OR7G2Q8NG99 324 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.08□□□□□ -1.44
VPS53-213ENST00000572334 RDH11Q8TC12 318 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms