RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 VPS41P49754 854 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 XKP51811 444 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 MAP4K2Q12851 820 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 P2RY6Q15077 328 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 TRIP13Q15645 432 aaPredicted RBP16.02■□□□□ 0.16
CLK3-227ENST00000570296 CDKL4Q5MAI5 379 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 OR52B6Q8NGF0 335 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 OR5M1Q8NGP8 315 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 C3orf49Q96BT1 292 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 ADOQ96SZ5 270 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 ARMCX1Q9P291 453 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 STOML1Q9UBI4 398 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 PRODH2Q9UF12 536 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 ESYT3A0FGR9 886 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 C17orf51A8MQB3 221 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 E7EQL1 145 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 PORP16435 677 aaPredicted RBP16.01■□□□□ 0.15
CLK3-227ENST00000570296 ZNF23P17027 643 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 BSGP35613 385 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 PIK3CBP42338 1070 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 PSPHP78330 225 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 MGAT2Q10469 447 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 EXOSC7Q15024 291 aaKnown RBP16.01■□□□□ 0.15
CLK3-227ENST00000570296 KCTD19Q17RG1 926 aaPredicted RBP16.01■□□□□ 0.15
CLK3-227ENST00000570296 PRICKLE4Q2TBC4 344 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 SULT1C3Q6IMI6 304 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 MFSD12Q6NUT3 480 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 TFAP2EQ6VUC0 442 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 DEF8Q6ZN54 512 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 PLD6Q8N2A8 252 aaKnown RBP16.01■□□□□ 0.15
CLK3-227ENST00000570296 HUS1BQ8NHY5 278 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 PTGES2Q9H7Z7 377 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 ZNF639Q9UID6 485 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 GPR55Q9Y2T6 319 aaPredicted RBP16.01■□□□□ 0.15
CLK3-227ENST00000570296 PLLPQ9Y342 182 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 KMT2CQ8NEZ4 4911 aaKnown RBP16.01■□□□□ 0.15
CLK3-227ENST00000570296 CMYA5Q8N3K9 4069 aa16.01■□□□□ 0.15
CLK3-227ENST00000570296 WNK1Q9H4A3 2382 aa16■□□□□ 0.15
CLK3-227ENST00000570296 EIF1AYO14602 144 aaKnown RBP16■□□□□ 0.15
CLK3-227ENST00000570296 SMAD9O15198 467 aaKnown RBP16■□□□□ 0.15
CLK3-227ENST00000570296 TSPAN2O60636 221 aa16■□□□□ 0.15
CLK3-227ENST00000570296 SYNGR4O95473 234 aa16■□□□□ 0.15
CLK3-227ENST00000570296 TTC4O95801 387 aa16■□□□□ 0.15
CLK3-227ENST00000570296 DDX39BQ13838 428 aaKnown RBP16■□□□□ 0.15
CLK3-227ENST00000570296 PPA1Q15181 289 aa16■□□□□ 0.15
CLK3-227ENST00000570296 FBXO48Q5FWF7 155 aa16■□□□□ 0.15
CLK3-227ENST00000570296 GTF2IRD2BQ6EKJ0 949 aa16■□□□□ 0.15
CLK3-227ENST00000570296 TBC1D1Q86TI0 1168 aaPredicted RBP16■□□□□ 0.15
CLK3-227ENST00000570296 GTF2IRD2Q86UP8 949 aa16■□□□□ 0.15
CLK3-227ENST00000570296 OR10D3Q8NH80 312 aa16■□□□□ 0.15
CLK3-227ENST00000570296 ESAMQ96AP7 390 aa16■□□□□ 0.15
CLK3-227ENST00000570296 BRINP2Q9C0B6 783 aa16■□□□□ 0.15
CLK3-227ENST00000570296 SMYD2Q9NRG4 433 aa16■□□□□ 0.15
CLK3-227ENST00000570296 MAT2BQ9NZL9 334 aa16■□□□□ 0.15
CLK3-227ENST00000570296 SLC17A6Q9P2U8 582 aa16■□□□□ 0.15
CLK3-227ENST00000570296 LY6HO94772 140 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 CBX7O95931 251 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 PTX3P26022 381 aaPredicted RBP15.99■□□□□ 0.15
CLK3-227ENST00000570296 IL12BP29460 328 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 KRT20P35900 424 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 MRPS22P82650 360 aaKnown RBP15.99■□□□□ 0.15
CLK3-227ENST00000570296 SCGB2A2Q13296 93 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 ITGADQ13349 1161 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 TEDDM1Q5T9Z0 273 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 FAM111BQ6SJ93 734 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 Q6ZSR9 355 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 LARP4Q71RC2 724 aaKnown RBP eCLIP15.99■□□□□ 0.15
CLK3-227ENST00000570296 BHLHA15Q7RTS1 189 aaPredicted RBP15.99■□□□□ 0.15
CLK3-227ENST00000570296 TDRPQ86YL5 185 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 RNF175Q8N4F7 328 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 RNF10Q8N5U6 811 aaKnown RBP15.99■□□□□ 0.15
CLK3-227ENST00000570296 KCTD4Q8WVF5 259 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 ANKRD49Q8WVL7 239 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 C1GALT1C1Q96EU7 318 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 CERS2Q96G23 380 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 BTBD9Q96Q07 612 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 RBM4Q9BWF3 364 aaKnown RBP15.99■□□□□ 0.15
CLK3-227ENST00000570296 MED11Q9P086 117 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 MGAT4BQ9UQ53 548 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 TSC22D4Q9Y3Q8 395 aa15.99■□□□□ 0.15
CLK3-227ENST00000570296 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.99■□□□□ 0.15
CLK3-227ENST00000570296 TRIM77I1YAP6 450 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 CCNT2O60583 730 aaKnown RBP15.98■□□□□ 0.15
CLK3-227ENST00000570296 ADAP00813 363 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 ATP1B1P05026 303 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 EMDP50402 254 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 FABP6P51161 128 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 PNLIPRP2P54317 469 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 CHRNB3Q05901 458 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 IQCCQ4KMZ1 466 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 SPANXN3Q5MJ09 141 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 ZNF544Q6NX49 715 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 SHISA2Q6UWI4 295 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 TREML4Q6UXN2 200 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 LRRC70Q7Z2Q7 622 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 GALNT10Q86SR1 603 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 NUDT13Q86X67 352 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 TXLNBQ8N3L3 684 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 OR52R1Q8NGF1 315 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 MAIP1Q8WWC4 291 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms