RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 SPNP16150 400 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 ACSL1P33121 698 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 TRHRP34981 398 aaPredicted RBP8.21□□□□□ -1.09
LINC00558-201ENST00000569422 GIPRP48546 466 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 CD97P48960 835 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 PCYT1AP49585 367 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 PDX1P52945 283 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 ARFIP1P53367 373 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 PRR5P85299 388 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 SLX4IPQ5VYV7 408 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 PPP2R2DQ66LE6 453 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 ANKRD54Q6NXT1 300 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 SLC30A6Q6NXT4 461 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 SYCE2Q6PIF2 218 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 LHFPL3Q86UP9 236 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 NKAIN4Q8IVV8 208 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 UBE2J2Q8N2K1 259 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 OR8J1Q8NGP2 316 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 SGK3Q96BR1 496 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 SIPA1Q96FS4 1042 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 SMAD5Q99717 465 aaKnown RBP8.21□□□□□ -1.09
LINC00558-201ENST00000569422 C1QTNF2Q9BXJ5 285 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 ADAP2Q9NPF8 381 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 MAN2C1Q9NTJ4 1040 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 GIN1Q9NXP7 522 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 RPL36Q9Y3U8 105 aaKnown RBP8.21□□□□□ -1.09
LINC00558-201ENST00000569422 PCDHGA3Q9Y5H0 932 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 SPIN1Q9Y657 262 aaPredicted RBP8.21□□□□□ -1.09
LINC00558-201ENST00000569422 HEATR5BQ9P2D3 2071 aa8.21□□□□□ -1.09
LINC00558-201ENST00000569422 SH3D21A4FU49 640 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 CHURC1-FNTBB4DL54 471 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 LOC110117498-PIK3R3F6TDL0 507 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 SSX4O60224 188 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 FHP07954 510 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 ACADMP11310 421 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 HPGDP15428 266 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 CPN2P22792 545 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 PSMA1P25786 263 aaKnown RBP8.21□□□□□ -1.1
LINC00558-201ENST00000569422 FRKP42685 505 aaPredicted RBP8.21□□□□□ -1.1
LINC00558-201ENST00000569422 PXNP49023 591 aaPredicted RBP8.21□□□□□ -1.1
LINC00558-201ENST00000569422 TPTEP56180 551 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 RGS8P57771 180 aaPredicted RBP8.21□□□□□ -1.1
LINC00558-201ENST00000569422 MRPS15P82914 257 aaKnown RBP8.21□□□□□ -1.1
LINC00558-201ENST00000569422 IRF3Q14653 427 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 PRRT3Q5FWE3 981 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 C22orf42Q6IC83 251 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 SLC48A1Q6P1K1 146 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 FAM111BQ6SJ93 734 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 ZNF614Q8N883 585 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 TTLQ8NG68 377 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 CDS1Q92903 461 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 ELP4Q96EB1 424 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 C1GALT1C1Q96EU7 318 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 ART5Q96L15 291 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 CDCA4Q9BXL8 241 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 SEMA4GQ9NTN9 838 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 PCDHGB7Q9Y5F8 929 aa8.21□□□□□ -1.1
LINC00558-201ENST00000569422 PLD2O14939 933 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 CDRT1O95170 752 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 LGI1O95970 557 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 EGFP01133 1207 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 ALPPP05187 535 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 CLEC2LP0C7M8 214 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 F3P13726 295 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 FUT1P19526 365 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 NTSR1P30989 418 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 UGT2B10P36537 528 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 ETV5P41161 510 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 KIR2DL1P43626 348 aaPredicted RBP8.2□□□□□ -1.1
LINC00558-201ENST00000569422 CBX5P45973 191 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 CAV3P56539 151 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 SMIM11AP58511 58 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 DLX2Q07687 328 aaPredicted RBP8.2□□□□□ -1.1
LINC00558-201ENST00000569422 TMEM35AQ53FP2 167 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 ZMAT1Q5H9K5 638 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 KRBOX4Q5JUW0 171 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 ATAD3BQ5T9A4 648 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 BHLHB9Q6PI77 547 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 ZC3H14Q6PJT7 736 aaKnown RBP8.2□□□□□ -1.1
LINC00558-201ENST00000569422 IGF2-ASQ6U949 168 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 PLEKHM3Q6ZWE6 761 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 PRSS41Q7RTY9 318 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 ATCAYQ86WG3 371 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 KIF18BQ86Y91 864 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 CAMKK1Q8N5S9 505 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 NATD1Q8N6N6 113 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 C9orf43Q8TAL5 461 aaPredicted RBP8.2□□□□□ -1.1
LINC00558-201ENST00000569422 OR2M4Q96R27 311 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 TIMM29Q9BSF4 260 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 SPATA5L1Q9BVQ7 753 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 RBCK1Q9BYM8 510 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 SAP130Q9H0E3 1048 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 NCOR1P1Q9H4R4 102 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 C3orf14Q9HBI5 128 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 CNOT2Q9NZN8 540 aaKnown RBP8.2□□□□□ -1.1
LINC00558-201ENST00000569422 ADAM29Q9UKF5 820 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 SATB2Q9UPW6 733 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 SLC17A4Q9Y2C5 497 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 COLEC10Q9Y6Z7 277 aa8.2□□□□□ -1.1
LINC00558-201ENST00000569422 SDK1Q7Z5N4 2213 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms