RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 PEX19P40855 299 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 PRKAG1P54619 331 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 B3GALT5-AS1P59052 145 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 NAA20P61599 178 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 HSPB3Q12988 150 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 DECR1Q16698 335 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 CYP27C1Q4G0S4 372 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 LIPMQ5VYY2 423 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 FBXW10Q5XX13 1052 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 Q6ZSR9 355 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 CHMP1BQ7LBR1 199 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 MARCH3Q86UD3 253 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 CDC20BQ86Y33 519 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 KIF18BQ86Y91 864 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 GRAMD2AQ8IUY3 354 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 UBQLNLQ8IYU4 475 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 CNPY4Q8N129 248 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 OR2L13Q8N349 312 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 EIF1ADQ8N9N8 165 aaKnown RBP9.26□□□□□ -0.93
LDLR-214ENST00000560628 OR2M3Q8NG83 312 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 OR2T11Q8NH01 316 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 OR2W6PQ8NHA6 318 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 GOT1L1Q8NHS2 421 aaPredicted RBP9.26□□□□□ -0.93
LDLR-214ENST00000560628 CLHC1Q8NHS4 586 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 DUSP19Q8WTR2 217 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 RNF138Q8WVD3 245 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 WNT2BQ93097 391 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 CIDECQ96AQ7 238 aaPredicted RBP9.26□□□□□ -0.93
LDLR-214ENST00000560628 TM9SF2Q99805 663 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 GATA5Q9BWX5 397 aaPredicted RBP9.26□□□□□ -0.93
LDLR-214ENST00000560628 RBM24Q9BX46 236 aaKnown RBP9.26□□□□□ -0.93
LDLR-214ENST00000560628 LRTM1Q9HBL6 345 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 EQTNQ9NQ60 294 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 C1orf109Q9NX04 203 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 JKAMPQ9P055 326 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 FOXD3Q9UJU5 478 aaPredicted RBP9.26□□□□□ -0.93
LDLR-214ENST00000560628 PLEKHA6Q9Y2H5 1048 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 WBP11Q9Y2W2 641 aaKnown RBP9.26□□□□□ -0.93
LDLR-214ENST00000560628 MRPS18CQ9Y3D5 142 aaKnown RBP9.26□□□□□ -0.93
LDLR-214ENST00000560628 TACC2O95359 2948 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 AKAP6Q13023 2319 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 PRRC2AP48634 2157 aaKnown RBP9.26□□□□□ -0.93
LDLR-214ENST00000560628 H0YC42 278 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 RGS14O43566 566 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 TRIM13O60858 407 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 IL33O95760 270 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 IGKV1D-16P01601 117 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 EPXP11678 715 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 CD1EP15812 388 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 ZNF708P17019 499 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 EFNA1P20827 205 aaPredicted RBP9.25□□□□□ -0.93
LDLR-214ENST00000560628 CHMP24386 653 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 GPC1P35052 558 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 CPA2P48052 419 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 TPD52P55327 224 aaPredicted RBP9.25□□□□□ -0.93
LDLR-214ENST00000560628 DSCR4P56555 118 aaPredicted RBP9.25□□□□□ -0.93
LDLR-214ENST00000560628 CLDN18P56856 261 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 PSPHP78330 225 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 SLC18A2Q05940 514 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 PCLAFQ15004 111 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 DAZAP2Q15038 168 aaPredicted RBP9.25□□□□□ -0.93
LDLR-214ENST00000560628 ZNHIT3Q15649 155 aaPredicted RBP9.25□□□□□ -0.93
LDLR-214ENST00000560628 RFTN2Q52LD8 501 aaPredicted RBP9.25□□□□□ -0.93
LDLR-214ENST00000560628 IKBIPQ70UQ0 350 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 P4HA3Q7Z4N8 544 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 ADGRE4PQ86SQ3 457 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 EXOC3L1Q86VI1 746 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 FADS6Q8N9I5 356 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 PIK3R3Q92569 461 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 DTNBP1Q96EV8 351 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 RMND5BQ96G75 393 aaPredicted RBP9.25□□□□□ -0.93
LDLR-214ENST00000560628 TSSK3Q96PN8 268 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 TUBB1Q9H4B7 451 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 Q9N2J8 555 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 SDHAF3Q9NRP4 125 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 SH3BP4Q9P0V3 963 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 CLCF1Q9UBD9 225 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 ST6GALNAC2Q9UJ37 374 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 ZNF337Q9Y3M9 751 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 MED13LQ71F56 2210 aa9.25□□□□□ -0.93
LDLR-214ENST00000560628 AKAP9Q99996 3911 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 TMEM233B4DJY2 109 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 PDPK1O15530 556 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 SPAG7O75391 227 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 SMNDC1O75940 238 aaKnown RBP eCLIP9.24□□□□□ -0.93
LDLR-214ENST00000560628 SLITRK5O94991 958 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 UTS2O95399 124 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 PSMG1O95456 288 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 CHRNGP07510 517 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 PRPS2P11908 318 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 PEPDP12955 493 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 SDC1P18827 310 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 PRPH2P23942 346 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 ALDH3A1P30838 453 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 CLK3P49761 638 aaKnown RBP9.24□□□□□ -0.93
LDLR-214ENST00000560628 MANFP55145 182 aaKnown RBP9.24□□□□□ -0.93
LDLR-214ENST00000560628 CLDN15P56746 228 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 BCL2A1Q16548 175 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 GALNTL6Q49A17 601 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 ZNF385BQ569K4 471 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms