RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ZNF544Q6NX49 715 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 SLC48A1Q6P1K1 146 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 SMARCD3Q6STE5 483 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 SLC36A4Q6YBV0 504 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 HSDL2Q6YN16 418 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 RRM2BQ7LG56 351 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 GALNT12Q8IXK2 581 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 NATD1Q8N6N6 113 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 OR7G2Q8NG99 324 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 GANCQ8TET4 914 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 UBASH3BQ8TF42 649 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 SMARCD2Q92925 531 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 MSLNLQ96KJ4 702 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 WDFY2Q96P53 400 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 PLA2G2FQ9BZM2 168 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 STON1Q9Y6Q2 735 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 BTN3A3O00478 584 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 PROM1O43490 865 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 ACADMP11310 421 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 PKLRP30613 574 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 AHRP35869 848 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 HSD17B2P37059 387 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 SLC1A3P43003 542 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 ZNF155Q12901 538 aaPredicted RBP12.06□□□□□ -0.48
LDLR-207ENST00000558013 FAM109BQ6ICB4 259 aaPredicted RBP12.06□□□□□ -0.48
LDLR-207ENST00000558013 VITQ6UXI7 678 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 RD3Q7Z3Z2 195 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 ZNF485Q8NCK3 441 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 CDS1Q92903 461 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 ZNF681Q96N22 645 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 ARHGAP9Q9BRR9 750 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 MCOLN1Q9GZU1 580 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 MKRN2Q9H000 416 aaKnown RBP12.06□□□□□ -0.48
LDLR-207ENST00000558013 BTBD1Q9H0C5 482 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 NT5DC2Q9H857 520 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 B3GAT2Q9NPZ5 323 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 GIMAP4Q9NUV9 329 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 THAP10Q9P2Z0 257 aaPredicted RBP12.06□□□□□ -0.48
LDLR-207ENST00000558013 ENTPD4Q9Y227 616 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 NPIPA5A0A0B4J1W7 369 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 A0A0G2JPF8 293 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 ISM1B1AKI9 464 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 HNRNPCL2B2RXH8 293 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 B4DXG7 233 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 HNRNPCL3B7ZW38 293 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 NPIPA7E9PJI5 369 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 ALPPP05187 535 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 CCNYL3P0C7X3 344 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 NPIPA8P0DM63 369 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 HNRNPCL4P0DMR1 293 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 CSNK2A2P19784 350 aaPredicted RBP12.05□□□□□ -0.48
LDLR-207ENST00000558013 AK4P27144 223 aaPredicted RBP12.05□□□□□ -0.48
LDLR-207ENST00000558013 CD83Q01151 205 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 CSTF1Q05048 431 aaKnown RBP12.05□□□□□ -0.48
LDLR-207ENST00000558013 SCN1BQ07699 218 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 RAB40BQ12829 278 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 FZD5Q13467 585 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 KLHL22Q53GT1 634 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 C16orf62Q7Z3J2 963 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 OR2L5Q8NG80 312 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 CCL4L1Q8NHW4 92 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 GIMAP5Q96F15 307 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 SMAD5Q99717 465 aaKnown RBP12.05□□□□□ -0.48
LDLR-207ENST00000558013 PINK1Q9BXM7 581 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 FBXO34Q9NWN3 711 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 ACSL5Q9ULC5 683 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 CLCA2Q9UQC9 943 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 ZNF860A6NHJ4 632 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 SLC30A4O14863 429 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 POLR1CO15160 346 aaPredicted RBP12.05□□□□□ -0.48
LDLR-207ENST00000558013 GKN3PP0CG01 181 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 RGS8P57771 180 aaPredicted RBP12.05□□□□□ -0.48
LDLR-207ENST00000558013 SIM1P81133 766 aaPredicted RBP12.05□□□□□ -0.48
LDLR-207ENST00000558013 TSPAN31Q12999 210 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 TPBGQ13641 420 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 PDGFRLQ15198 375 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 Q5BKY6 102 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 TMEM240Q5SV17 173 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 SLC25A30Q5SVS4 291 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 DDI2Q5TDH0 399 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 RNLSQ5VYX0 342 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 VASNQ6EMK4 673 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 CNIH2Q6PI25 160 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 QSOX2Q6ZRP7 698 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 NR2C2APQ86WQ0 139 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 SIRT6Q8N6T7 355 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 ZCCHC10Q8TBK6 192 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 SAMD8Q96LT4 415 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 SECISBP2Q96T21 854 aaKnown RBP12.05□□□□□ -0.48
LDLR-207ENST00000558013 ZNF649Q9BS31 505 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 HCAR1Q9BXC0 346 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 SLC13A4Q9UKG4 626 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 SNX7Q9UNH6 387 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 SIRT4Q9Y6E7 314 aaPredicted RBP12.05□□□□□ -0.48
LDLR-207ENST00000558013 CLCA3PQ9Y6N3 262 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 MUC22E2RYF6 1773 aaPredicted RBP12.05□□□□□ -0.48
LDLR-207ENST00000558013 CFAP54Q96N23 3096 aa12.05□□□□□ -0.48
LDLR-207ENST00000558013 PRICKLE3O43900 615 aaPredicted RBP12.04□□□□□ -0.48
LDLR-207ENST00000558013 ATP6V1E1P36543 226 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms