RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ALDH6A1Q02252 535 aaKnown RBP24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 ZNF155Q12901 538 aaPredicted RBP24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 TRAM2Q15035 370 aa24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 CWF19L1Q69YN2 538 aaKnown RBP24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 ZNF836Q6ZNA1 936 aa24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 C11orf74Q86VG3 221 aa24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 ERI1Q8IV48 349 aaKnown RBP24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 SVOPQ8N4V2 548 aa24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 OR4K5Q8NGD3 323 aa24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 GPR151Q8TDV0 419 aa24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 DIO2Q92813 273 aa24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 SLC38A4Q969I6 547 aa24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 RBM18Q96H35 190 aaKnown RBP24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 LMF2Q9BU23 707 aaKnown RBP24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 ALOXE3Q9BYJ1 711 aa24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 LHPPQ9H008 270 aa24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 MN1Q10571 1320 aaPredicted RBP24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 TGFBR3LH3BV60 316 aa24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 ZNF749O43361 778 aa24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 KIAA0513O60268 411 aa24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 CYP7B1O75881 506 aa24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 DHPSP49366 369 aaPredicted RBP24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 HSD17B7P56937 341 aa24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 ST3GAL3Q11203 375 aa24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 TARDBPQ13148 414 aaKnown RBP eCLIP24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 BIKQ13323 160 aa24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 CCNJQ5T5M9 372 aa24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 GPR107Q5VW38 600 aa24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 PRSS48Q7RTY5 328 aa24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 OR51Q1Q8NH59 317 aa24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 PIK3R3Q92569 461 aa24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 RIT1Q92963 219 aa24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 MPP4Q96JB8 637 aa24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 ZNF578Q96N58 590 aaPredicted RBP24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 DGAT2Q96PD7 388 aa24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 POLR2J3Q9H1A7 115 aaKnown RBP24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 PRMT8Q9NR22 394 aaPredicted RBP24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 PCDHGA10Q9Y5H3 936 aa24.51■■□□□ 1.51
CCDC88C-205ENST00000553403 H3BMH7 237 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 TPST2O60704 377 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 TRMUO75648 421 aaKnown RBP24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 GALNSP34059 522 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 GABRA3P34903 492 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 STT3AP46977 705 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 ARL4DP49703 201 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 CFHR1Q03591 330 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 GPR68Q15743 365 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 PMS2CLQ68D20 193 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 C1orf94Q6P1W5 598 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 PRRX2Q99811 253 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 PELOQ9BRX2 385 aaKnown RBP24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 NDOR1Q9UHB4 597 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 CDC14AQ9UNH5 594 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 CLDN16Q9Y5I7 305 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 SCN2AQ99250 2005 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 FRS3O43559 492 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 OR5F1O95221 314 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 TDGF1P13385 188 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 CD1CP29017 333 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 IFNGR2P38484 337 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 MVKQ03426 396 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 EMX1Q04741 257 aaPredicted RBP24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 ZNHIT3Q15649 155 aaPredicted RBP24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 SYT16Q17RD7 645 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 SLX4IPQ5VYV7 408 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 MED25Q71SY5 747 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 PRSS42Q7Z5A4 293 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 ZER1Q7Z7L7 766 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 KMT5CQ86Y97 462 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 CCDC103Q8IW40 242 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 D2HGDHQ8N465 521 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 C12orf43Q96C57 262 aaKnown RBP24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 MVB12AQ96EY5 273 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 SIGLEC11Q96RL6 698 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 POLR2J2Q9GZM3 115 aaKnown RBP24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 EVA1AQ9H8M9 152 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 FOLH1BQ9HBA9 442 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 CUTCQ9NTM9 273 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 SUSD2Q9UGT4 822 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 PSORS1C1Q9UIG5 152 aa24.5■■□□□ 1.51
CCDC88C-205ENST00000553403 ENO4A6NNW6 628 aa24.49■■□□□ 1.51
CCDC88C-205ENST00000553403 ZNF99A8MXY4 864 aaPredicted RBP24.49■■□□□ 1.51
CCDC88C-205ENST00000553403 OR2B3O76000 313 aa24.49■■□□□ 1.51
CCDC88C-205ENST00000553403 PDGFBP01127 241 aaPredicted RBP24.49■■□□□ 1.51
CCDC88C-205ENST00000553403 GSTM3P21266 225 aa24.49■■□□□ 1.51
CCDC88C-205ENST00000553403 TMBIM6P55061 237 aa24.49■■□□□ 1.51
CCDC88C-205ENST00000553403 SERTAD2Q14140 314 aa24.49■■□□□ 1.51
CCDC88C-205ENST00000553403 KCNAB1Q14722 419 aa24.49■■□□□ 1.51
CCDC88C-205ENST00000553403 AMZ1Q400G9 498 aa24.49■■□□□ 1.51
CCDC88C-205ENST00000553403 WDR74Q6RFH5 385 aaPredicted RBP24.49■■□□□ 1.51
CCDC88C-205ENST00000553403 TOR1AIP2Q8NFQ8 470 aa24.49■■□□□ 1.51
CCDC88C-205ENST00000553403 FAR1Q8WVX9 515 aa24.49■■□□□ 1.51
CCDC88C-205ENST00000553403 MCHR1Q99705 422 aa24.49■■□□□ 1.51
CCDC88C-205ENST00000553403 SEMA4GQ9NTN9 838 aa24.49■■□□□ 1.51
CCDC88C-205ENST00000553403 NLGN3Q9NZ94 848 aa24.49■■□□□ 1.51
CCDC88C-205ENST00000553403 BRINP1O60477 761 aa24.48■■□□□ 1.51
CCDC88C-205ENST00000553403 MT-ND2P03891 347 aa24.48■■□□□ 1.51
CCDC88C-205ENST00000553403 MMP11P24347 488 aa24.48■■□□□ 1.51
CCDC88C-205ENST00000553403 POU1F1P28069 291 aa24.48■■□□□ 1.51
CCDC88C-205ENST00000553403 CNR2P34972 360 aa24.48■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms