RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 LINC00523Q86TU6 105 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 SLC26A11Q86WA9 606 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 CCDC50Q8IVM0 306 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 RAB42Q8N4Z0 105 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 C11orf44Q8N8P7 122 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 FAM71DQ8N9W8 422 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 RELL2Q8NC24 303 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 CAMKVQ8NCB2 501 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 OR5T3Q8NGG3 340 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 OR5M9Q8NGP3 310 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 GOT1L1Q8NHS2 421 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 MCOLN3Q8TDD5 553 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 CREB3L4Q8TEY5 395 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 ATG4AQ8WYN0 398 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 RERGQ96A58 199 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 LRRC45Q96CN5 670 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 DAZAP1Q96EP5 407 aaKnown RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 SMIM10Q96HG1 83 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 FOPNLQ96NB1 174 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 ALS2CR12Q96Q35 445 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 HIST1H2AAQ96QV6 131 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 PANX3Q96QZ0 392 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 EBNA1BP2Q99848 306 aaKnown RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 FAM167BQ9BTA0 163 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 FAM129AQ9BZQ8 928 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 SLCO5A1Q9H2Y9 848 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 NHEJ1Q9H9Q4 299 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 CLK4Q9HAZ1 481 aaKnown RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 ZBTB26Q9HCK0 441 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 NECTIN3Q9NQS3 549 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 TREX1Q9NSU2 369 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 BEX4Q9NWD9 120 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 UTP6Q9NYH9 597 aaKnown RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 NAALAD2Q9Y3Q0 740 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 CLDN16Q9Y5I7 305 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 CPAMD8Q8IZJ3 1885 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 A0A0G2JMM0 328 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 A0A1W2PPB8 328 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 A0A1W2PRS3 328 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 HMX3A6NHT5 357 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 ERI2A8K979 691 aaKnown RBP3.24□□□□□ -1.89
LIMA1-206ENST00000550611 PRSS47A8MTI9 375 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 KIR3DP1A8MWS1 328 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 H3BMM5 538 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 CHST10O43529 356 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 DNPH1O43598 174 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 PRKNO60260 465 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-206ENST00000550611 HCN1O60741 890 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 GALR3O60755 368 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-206ENST00000550611 WDR1O75083 606 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 NIPSNAP2O75323 286 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 RDH16O75452 317 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 CDC123O75794 336 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-206ENST00000550611 TJP3O95049 919 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 GOSR1O95249 250 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 STATHP02808 62 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 NPPBP16860 134 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 CNR1P21554 472 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 CTNNA2P26232 953 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 IMPA1P29218 277 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 FMO4P31512 558 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 STIP1P31948 543 aaKnown RBP3.24□□□□□ -1.89
LIMA1-206ENST00000550611 CYLC1P35663 651 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-206ENST00000550611 COILP38432 576 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-206ENST00000550611 LIPAP38571 399 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 CCT5P48643 541 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 CLCN2P51788 898 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 ALDH18A1P54886 795 aaKnown RBP3.24□□□□□ -1.89
LIMA1-206ENST00000550611 DCAF7P61962 342 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 PRAMEP78395 509 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 CCNIQ14094 377 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 KEAP1Q14145 624 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 HERC3Q15034 1050 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 KLHL38Q2WGJ6 581 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 TMEM95Q3KNT9 176 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 XKR6Q5GH73 641 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 C1orf185Q5T7R7 199 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 NDUFAF5Q5TEU4 345 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 MFSD4BQ5TF39 518 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 CAPN13Q6MZZ7 669 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-206ENST00000550611 MZT2AQ6P582 158 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 PRSS57Q6UWY2 283 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 ASPGQ86U10 573 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 LUZP1Q86V48 1076 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 GPALPP1Q8IXQ4 340 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 LRRC75A-AS1Q8N1F1 130 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 CYP4Z2PQ8N1L4 340 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 TMEM251Q8N6I4 163 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 MFSD9Q8NBP5 474 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 NAXEQ8NCW5 288 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 PPFIBP2Q8ND30 876 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 ABHD11Q8NFV4 315 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 OR2M7Q8NG81 312 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 OR4K1Q8NGD4 311 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 OR10Q1Q8NGQ4 319 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 RP9Q8TA86 221 aaKnown RBP3.24□□□□□ -1.89
LIMA1-206ENST00000550611 GSDMBQ8TAX9 411 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 XAGE5Q8WWM1 108 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 SLC13A3Q8WWT9 602 aa3.24□□□□□ -1.89
LIMA1-206ENST00000550611 LPGAT1Q92604 370 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms