RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 RTN4RQ9BZR6 473 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 EQTNQ9NQ60 294 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 DUSP22Q9NRW4 184 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 ZCCHC3Q9NUD5 404 aaKnown RBP11.85□□□□□ -0.51
VPS28-216ENST00000533806 TINAGQ9UJW2 476 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 OR14I1A6ND48 311 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 E9PBE3 544 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 CDC40O60508 579 aaKnown RBP eCLIP11.84□□□□□ -0.51
VPS28-216ENST00000533806 KCNK2O95069 426 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 NGFRP08138 427 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 IDO1P14902 403 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 IL12BP29460 328 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 KRT20P35900 424 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 IDH3AP50213 366 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 GSTA3Q16772 222 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.84□□□□□ -0.51
VPS28-216ENST00000533806 FAM174BQ3ZCQ3 159 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 PDCD4Q53EL6 469 aaKnown RBP11.84□□□□□ -0.51
VPS28-216ENST00000533806 ANXA8L1Q5VT79 327 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 APOOLQ6UXV4 268 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 OR56A1Q8NGH5 318 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 OR1J4Q8NGS1 313 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 GOT1L1Q8NHS2 421 aaPredicted RBP11.84□□□□□ -0.51
VPS28-216ENST00000533806 NEIL3Q8TAT5 605 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 GPR151Q8TDV0 419 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 MOAP1Q96BY2 351 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 JSRP1Q96MG2 331 aaPredicted RBP11.84□□□□□ -0.51
VPS28-216ENST00000533806 CCDC115Q96NT0 180 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 STACQ99469 402 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 PIGUQ9H490 435 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 SERHL2Q9H4I8 314 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 FBXO34Q9NWN3 711 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 FLRT3Q9NZU0 649 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 SPRR3Q9UBC9 169 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 ABCG2Q9UNQ0 655 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 MEMO1Q9Y316 297 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 WIF1Q9Y5W5 379 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 SNX8Q9Y5X2 465 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 EML6Q6ZMW3 1958 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 EXPH5Q8NEV8 1989 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 DOPEY2Q9Y3R5 2298 aa11.84□□□□□ -0.51
VPS28-216ENST00000533806 SPTBN1Q01082 2364 aaKnown RBP11.83□□□□□ -0.52
VPS28-216ENST00000533806 TRGV5A0A0B4J1U4 118 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 C17orf51A8MQB3 221 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 CCL21O00585 134 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 PRRG2O14669 202 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 GNB5O14775 395 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 DIAPH2O60879 1101 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 CBR3O75828 277 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 KCNH1O95259 989 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 UTS2O95399 124 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 ALOX5P09917 674 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 ABOP16442 354 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 LCN1P31025 176 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 EVI2BP34910 448 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 PRIM2P49643 509 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 DGKQP52824 942 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 NME5P56597 212 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 LASP1Q14847 261 aaKnown RBP11.83□□□□□ -0.52
VPS28-216ENST00000533806 GXYLT1Q4G148 440 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 NHSL2Q5HYW2 709 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 AP1ARQ63HQ0 302 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 NXNQ6DKJ4 435 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 CDC73Q6P1J9 531 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 ANGPTL8Q6UXH0 198 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 ZAR1Q86SH2 424 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 PLCZ1Q86YW0 608 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 GLB1L3Q8NCI6 653 aaPredicted RBP11.83□□□□□ -0.52
VPS28-216ENST00000533806 OR4C3Q8NH37 302 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 MIPOL1Q8TD10 442 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 STON2Q8WXE9 905 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 SLC9A6Q92581 669 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 RMND5BQ96G75 393 aaPredicted RBP11.83□□□□□ -0.52
VPS28-216ENST00000533806 CCDC120Q96HB5 630 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 EBF4Q9BQW3 602 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 YIPF4Q9BSR8 244 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 ACTRT3Q9BYD9 372 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 FAM120CQ9NX05 1096 aaKnown RBP11.83□□□□□ -0.52
VPS28-216ENST00000533806 KLRF1Q9NZS2 232 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 B4GALT7Q9UBV7 327 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 BTNL2Q9UIR0 455 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 MRTO4Q9UKD2 239 aaKnown RBP11.83□□□□□ -0.52
VPS28-216ENST00000533806 KCNE3Q9Y6H6 103 aa11.83□□□□□ -0.52
VPS28-216ENST00000533806 ZNF407Q9C0G0 2248 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 UQCRHLA0A096LP55 91 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 C9JVG2 144 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 E9PLN8 166 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 BCKDKO14874 412 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 UBDO15205 165 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 ZIC3O60481 467 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 ZG16O60844 167 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 SLC22A3O75751 556 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 SOX30O94993 753 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 CLDN1O95832 211 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 PGRP06401 933 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 TBXA2RP21731 343 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 GDF1P27539 372 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 S100A3P33764 101 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 MASP1P48740 699 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 PSMD4P55036 377 aaKnown RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms