RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 LIMS3P0CW19 117 aa19.86■□□□□ 0.77
VPS28-205ENST00000526204 LIMS4P0CW20 117 aa19.86■□□□□ 0.77
VPS28-205ENST00000526204 SEC13P55735 322 aa19.86■□□□□ 0.77
VPS28-205ENST00000526204 OR2B6P58173 313 aa19.86■□□□□ 0.77
VPS28-205ENST00000526204 TNFRSF17Q02223 184 aa19.86■□□□□ 0.77
VPS28-205ENST00000526204 DSG2Q14126 1118 aa19.86■□□□□ 0.77
VPS28-205ENST00000526204 CRTC2Q53ET0 693 aaPredicted RBP19.86■□□□□ 0.77
VPS28-205ENST00000526204 CLEC12AQ5QGZ9 265 aa19.86■□□□□ 0.77
VPS28-205ENST00000526204 C6orf132Q5T0Z8 1188 aa19.86■□□□□ 0.77
VPS28-205ENST00000526204 DDI2Q5TDH0 399 aa19.86■□□□□ 0.77
VPS28-205ENST00000526204 ZNF544Q6NX49 715 aa19.86■□□□□ 0.77
VPS28-205ENST00000526204 MBOAT2Q6ZWT7 520 aa19.86■□□□□ 0.77
VPS28-205ENST00000526204 PEX5LQ8IYB4 626 aa19.86■□□□□ 0.77
VPS28-205ENST00000526204 SLC41A3Q96GZ6 507 aa19.86■□□□□ 0.77
VPS28-205ENST00000526204 COQ7Q99807 217 aa19.86■□□□□ 0.77
VPS28-205ENST00000526204 KXD1Q9BQD3 176 aa19.86■□□□□ 0.77
VPS28-205ENST00000526204 ABCB9Q9NP78 766 aa19.86■□□□□ 0.77
VPS28-205ENST00000526204 SURF4O15260 269 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 APOL3O95236 402 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 IL7P13232 177 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 GNSP15586 552 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 SDC2P34741 201 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 RPS25P62851 125 aaKnown RBP19.85■□□□□ 0.77
VPS28-205ENST00000526204 SCN1BQ07699 218 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 PUS10Q3MIT2 529 aaKnown RBP19.85■□□□□ 0.77
VPS28-205ENST00000526204 GLYR1Q49A26 553 aaPredicted RBP19.85■□□□□ 0.77
VPS28-205ENST00000526204 AADACL4Q5VUY2 407 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 CD200R1LQ6Q8B3 271 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 FRRS1Q6ZNA5 592 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 GDF7Q7Z4P5 450 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 NRARPQ7Z6K4 114 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 NKAIN4Q8IVV8 208 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 SLC16A11Q8NCK7 471 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 OR7G2Q8NG99 324 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 OR4K14Q8NGD5 310 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 JPH3Q8WXH2 748 aaPredicted RBP19.85■□□□□ 0.77
VPS28-205ENST00000526204 POLMQ9NP87 494 aaPredicted RBP19.85■□□□□ 0.77
VPS28-205ENST00000526204 PRDM9Q9NQV7 894 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 ZNF443Q9Y2A4 671 aaPredicted RBP19.85■□□□□ 0.77
VPS28-205ENST00000526204 A0A1W2PQL4 384 aaPredicted RBP19.85■□□□□ 0.77
VPS28-205ENST00000526204 K7EQS6 105 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 SCAMP1O15126 338 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 SLC31A1O15431 190 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 KLF4O43474 513 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 ZIC2O95409 532 aaPredicted RBP19.85■□□□□ 0.77
VPS28-205ENST00000526204 CPN2P22792 545 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 SLC1A3P43003 542 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 SOX9P48436 509 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 TGM4P49221 684 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 SUZ12Q15022 739 aaKnown RBP19.85■□□□□ 0.77
VPS28-205ENST00000526204 BAK1Q16611 211 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 ZMAT1Q5H9K5 638 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 FAM131AQ6UXB0 335 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 OR2L13Q8N349 312 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 GDPD1Q8N9F7 314 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 ASB12Q8WXK4 309 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 SERINC2Q96SA4 455 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 HOXD1Q9GZZ0 328 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 SRMSQ9H3Y6 488 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 FBRSQ9HAH7 460 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 WDR45Q9Y484 360 aa19.85■□□□□ 0.77
VPS28-205ENST00000526204 CKAP5Q14008 2032 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 GRXCR1A8MXD5 290 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 BTN3A3O00478 584 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 CHST10O43529 356 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 CCNKO75909 580 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 HMGN1P05114 100 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 TLX1P31314 330 aaPredicted RBP19.84■□□□□ 0.77
VPS28-205ENST00000526204 KIAA1024LP59773 190 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 ARHGAP11BQ3KRB8 267 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 EIPR1Q53HC9 387 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 SDE2Q6IQ49 451 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 FAM111BQ6SJ93 734 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 ZNF620Q6ZNG0 422 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 SPATC1Q76KD6 591 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 UBQLNLQ8IYU4 475 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 ZNF485Q8NCK3 441 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 KIAA1143Q96AT1 154 aaPredicted RBP19.84■□□□□ 0.77
VPS28-205ENST00000526204 ELSPBP1Q96BH3 223 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 KCMF1Q9P0J7 381 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 PTGFRNQ9P2B2 879 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 FABP12A6NFH5 140 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 URADA6NGE7 173 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 SSX4O60224 188 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 NTSR1P30989 418 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 GPR50Q13585 617 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 KIR2DS3Q14952 304 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 PGGHGQ32M88 737 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 SLC30A6Q6NXT4 461 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 NRMQ8IXM6 262 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 OR4Q3Q8NH05 313 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 CDS1Q92903 461 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 COL26A1Q96A83 441 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 DIRAS2Q96HU8 199 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 CTRCQ99895 268 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 KATNB1Q9BVA0 655 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 MIXL1Q9H2W2 232 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 RERGLQ9H628 205 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 POU2F3Q9UKI9 436 aa19.84■□□□□ 0.77
VPS28-205ENST00000526204 EXOGQ9Y2C4 368 aaKnown RBP19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms