RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 KRT6BP04259 564 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 IL6P05231 212 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 RPLP0P05388 317 aaKnown RBP3.11□□□□□ -1.91
CD44-217ENST00000525348 YES1P07947 543 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 MELTFP08582 738 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 GPR89BP0CG08 455 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 HSMCR30P0CW71 290 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 DNAH10OSP0CZ25 163 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 PRPS2P11908 318 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 GP9P14770 177 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 C4BPBP20851 252 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 CPN2P22792 545 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 GLRA2P23416 452 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 RABIFP47224 123 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 STARP49675 285 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 METAP1P53582 386 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 NDUFV3P56181 108 aaKnown RBP3.11□□□□□ -1.91
CD44-217ENST00000525348 CLDN17P56750 224 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 SRP54P61011 504 aaKnown RBP3.11□□□□□ -1.91
CD44-217ENST00000525348 IFFO1Q0D2I5 559 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 CAMK2DQ13557 499 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 KIAA0141Q14154 515 aaPredicted RBP3.11□□□□□ -1.91
CD44-217ENST00000525348 CYTH1Q15438 398 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 MAPK6Q16659 721 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 EIPR1Q53HC9 387 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 TTMPQ5BVD1 217 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 CDKL4Q5MAI5 379 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 SPANXN4Q5MJ08 99 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 SAPCD1Q5SSQ6 148 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 MARCH8Q5T0T0 291 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 CCNJQ5T5M9 372 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 KRT80Q6KB66 452 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 ERICH5Q6P6B1 374 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 MOXD1Q6UVY6 613 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 CEACAM19Q7Z692 300 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 NRARPQ7Z6K4 114 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 ADAMTSL2Q86TH1 951 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 UNC45BQ8IWX7 931 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 SYCE1Q8N0S2 351 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 PYROXD2Q8N2H3 581 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 TCAIMQ8N3R3 496 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 FBXW8Q8N3Y1 598 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 STKLD1Q8NE28 680 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 SPATA4Q8NEY3 305 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 ZPLD1Q8TCW7 415 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 SCFD1Q8WVM8 642 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 SEPT8Q92599 483 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 CIDECQ96AQ7 238 aaPredicted RBP3.11□□□□□ -1.91
CD44-217ENST00000525348 RMND5BQ96G75 393 aaPredicted RBP3.11□□□□□ -1.91
CD44-217ENST00000525348 SLC25A23Q9BV35 468 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 GTPBP2Q9BX10 602 aaKnown RBP3.11□□□□□ -1.91
CD44-217ENST00000525348 CARD9Q9H257 536 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 SLC38A10Q9HBR0 1119 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 ZNF275Q9NSD4 429 aaPredicted RBP3.11□□□□□ -1.91
CD44-217ENST00000525348 SAMSN1Q9NSI8 373 aaKnown RBP3.11□□□□□ -1.91
CD44-217ENST00000525348 GTSE1Q9NYZ3 720 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 RCOR3Q9P2K3 495 aaPredicted RBP3.11□□□□□ -1.91
CD44-217ENST00000525348 DCDC2Q9UHG0 476 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 NARFQ9UHQ1 456 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 TSPAN16Q9UKR8 245 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 SLC22A14Q9Y267 594 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 ACOT9Q9Y305 439 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 MRPS18CQ9Y3D5 142 aaKnown RBP3.11□□□□□ -1.91
CD44-217ENST00000525348 GMPPBQ9Y5P6 360 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 SYNMO15061 1565 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 ADCY9O60503 1353 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 RFX7Q2KHR2 1363 aa3.11□□□□□ -1.91
CD44-217ENST00000525348 PLCH2O75038 1416 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 CEP162Q5TB80 1403 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 PCM1Q15154 2024 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 GOLGA3Q08378 1498 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 SMCO2A6NFE2 343 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 PCP4L1A6NKN8 68 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 ARHGEF33A8MVX0 844 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 ZNF879B4DU55 563 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 ATP6V1G2-DDX39BF2Z307 99 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 K7ERQ8 282 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 PSMD11O00231 422 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 RNF103O00237 685 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 TRAFD1O14545 582 aaPredicted RBP3.1□□□□□ -1.91
CD44-217ENST00000525348 DNALI1O14645 258 aaPredicted RBP3.1□□□□□ -1.91
CD44-217ENST00000525348 PHOX2AO14813 284 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 POLR1CO15160 346 aaPredicted RBP3.1□□□□□ -1.91
CD44-217ENST00000525348 GMNNO75496 209 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 SPAG6O75602 509 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 PRDM1O75626 825 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 RECQL5O94762 991 aaPredicted RBP3.1□□□□□ -1.91
CD44-217ENST00000525348 GSTA2P09210 222 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 TPBGLP0DKB5 382 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 COX5BP10606 129 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 ODC1P11926 461 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 KRT3P12035 628 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 EPORP19235 508 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 HLA-DPA1P20036 260 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 CMA1P23946 247 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 PPP2R1AP30153 589 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 ADSSP30520 456 aa3.1□□□□□ -1.91
CD44-217ENST00000525348 CDH5P33151 784 aaPredicted RBP3.1□□□□□ -1.91
CD44-217ENST00000525348 TMED10P49755 219 aaKnown RBP3.1□□□□□ -1.91
CD44-217ENST00000525348 KHKP50053 298 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms