RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 ALOX15BO15296 676 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 NOL4O94818 638 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 UBE4BO95155 1302 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 LYPD3O95274 346 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 CCDC192P0DO97 292 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 VDRP11473 427 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 MEDAGQ5VYS4 303 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 UFSP1Q6NVU6 142 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 BTNL3Q6UXE8 466 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 KRTAP11-1Q8IUC1 163 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 C9orf40Q8IXQ3 194 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 RNF148Q8N7C7 305 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 MINDY2Q8NBR6 621 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 NFAM1Q8NET5 270 aaPredicted RBP3.06□□□□□ -1.92
CD44-215ENST00000525241 ZNF564Q8TBZ8 553 aaPredicted RBP3.06□□□□□ -1.92
CD44-215ENST00000525241 NCLNQ969V3 563 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 NUS1Q96E22 293 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 PHYHIPLQ96FC7 376 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 SPXQ9BT56 116 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 C19orf24Q9BVV8 132 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 TMEM231Q9H6L2 316 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 ZNF702PQ9H963 129 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 DBNDD1Q9H9R9 158 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 GDAP2Q9NXN4 497 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 TMEM9Q9P0T7 183 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 SPASTQ9UBP0 616 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 APOBEC3BQ9UH17 382 aaKnown RBP3.06□□□□□ -1.92
CD44-215ENST00000525241 MOSPD1Q9UJG1 213 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 KLHL21Q9UJP4 597 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 PLA2G4CQ9UP65 541 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 USP6P35125 1406 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 ZFP92A6NM28 416 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 H3BTX0 84 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 MT-ATP6P00846 226 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 IGFBP1P08833 259 aaPredicted RBP3.05□□□□□ -1.92
CD44-215ENST00000525241 RALAP11233 206 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 ETS1P14921 441 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 PTBP1P26599 531 aaKnown RBP eCLIP3.05□□□□□ -1.92
CD44-215ENST00000525241 HTR5AP47898 357 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 CYBRD1Q53TN4 286 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 ZNF658Q5TYW1 1059 aaPredicted RBP3.05□□□□□ -1.92
CD44-215ENST00000525241 ZNF544Q6NX49 715 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 VPS36Q86VN1 386 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 PRR22Q8IZ63 422 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 MCOLN2Q8IZK6 566 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 CEND1Q8N111 149 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 Q8N7P7 452 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 C18orf25Q96B23 403 aaPredicted RBP3.05□□□□□ -1.92
CD44-215ENST00000525241 FAM122AQ96E09 287 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 ZNF414Q96IQ9 312 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 TMEM237Q96Q45 408 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 TSSK1BQ9BXA7 367 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 NMNAT2Q9BZQ4 307 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 PLSCR3Q9NRY6 295 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 ANAPC11Q9NYG5 84 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.05□□□□□ -1.92
CD44-215ENST00000525241 P2RX2Q9UBL9 471 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 PLEKHA6Q9Y2H5 1048 aa3.05□□□□□ -1.92
CD44-215ENST00000525241 CFAP65Q6ZU64 1925 aaKnown RBP3.05□□□□□ -1.92
CD44-215ENST00000525241 RNF222A6NCQ9 220 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 HDAC3O15379 428 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 PPIHO43447 177 aaKnown RBP3.04□□□□□ -1.92
CD44-215ENST00000525241 JCHAINP01591 159 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 TSPAN8P19075 237 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 ZP3P21754 424 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 CDH5P33151 784 aaPredicted RBP3.04□□□□□ -1.92
CD44-215ENST00000525241 P2RY4P51582 365 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 GPC3P51654 580 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 RIPPLY3P57055 190 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 GABPB1Q06547 395 aaPredicted RBP3.04□□□□□ -1.92
CD44-215ENST00000525241 UBE2V2Q15819 145 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 PRR4Q16378 134 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 CYP51A1Q16850 503 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 DCAF4L1Q3SXM0 396 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 RAB12Q6IQ22 244 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 SLC39A4Q6P5W5 647 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 STAC2Q6ZMT1 411 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 CSNK1A1LQ8N752 337 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 OR56B1Q8NGI3 324 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 TRPV5Q9NQA5 729 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 EHFQ9NZC4 300 aa3.04□□□□□ -1.92
CD44-215ENST00000525241 SSX5O60225 188 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 SERF1AO75920 110 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 STMN1P16949 149 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 ATP6V1E1P36543 226 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 SLC26A5P58743 744 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 TFDP1Q14186 410 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 SBK1Q52WX2 424 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 PAGE2BQ5JRK9 111 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 SLX4IPQ5VYV7 408 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 Q7L0L9 218 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 KDM8Q8N371 416 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 FAM71CQ8NEG0 241 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 MCHR2Q969V1 340 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 TADA1Q96BN2 335 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 SAMD8Q96LT4 415 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 KAT8Q9H7Z6 458 aaKnown RBP3.03□□□□□ -1.92
CD44-215ENST00000525241 PDFQ9HBH1 243 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 NYAP2Q9P242 653 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 ABCG2Q9UNQ0 655 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms